Hb_000085_410

Information

Type -
Description -
Location Contig85: 393118-399863
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09040g
description POPTRDRAFT_771436; hypothetical protein
nr
ID XP_002316760.1
description hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
swissprot
ID Q6ICW6
description Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1
trembl
ID B9I164
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s09040g PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at2g26730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_410 0.0 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
2 Hb_000922_050 0.0606122782 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
3 Hb_001110_060 0.0913930501 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_001408_080 0.0990498855 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
5 Hb_000742_290 0.1071653139 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_003427_070 0.1099061476 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
7 Hb_004531_130 0.1130576929 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
8 Hb_103225_030 0.1146808575 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
9 Hb_000139_520 0.1148947612 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
10 Hb_000684_110 0.1169108305 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
11 Hb_084812_010 0.1190702246 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
12 Hb_000849_030 0.1190832061 - - PREDICTED: fimbrin-2 [Jatropha curcas]
13 Hb_005111_020 0.1208320039 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
14 Hb_002918_270 0.1211131228 - - PREDICTED: protein E6-like [Populus euphratica]
15 Hb_009079_020 0.1240642752 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_004112_070 0.124485849 - - -
17 Hb_050898_030 0.1246511288 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002762_100 0.1255671929 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000000_320 0.1262274263 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
20 Hb_004607_060 0.1265272858 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_410 Hb_000085_410 Hb_000922_050 Hb_000922_050 Hb_000085_410--Hb_000922_050 Hb_001110_060 Hb_001110_060 Hb_000085_410--Hb_001110_060 Hb_001408_080 Hb_001408_080 Hb_000085_410--Hb_001408_080 Hb_000742_290 Hb_000742_290 Hb_000085_410--Hb_000742_290 Hb_003427_070 Hb_003427_070 Hb_000085_410--Hb_003427_070 Hb_004531_130 Hb_004531_130 Hb_000085_410--Hb_004531_130 Hb_000922_050--Hb_003427_070 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_025194_070 Hb_025194_070 Hb_000922_050--Hb_025194_070 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_000742_290--Hb_004531_130 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_010690_010 Hb_010690_010 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000742_290--Hb_000922_050 Hb_084304_010 Hb_084304_010 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117099 2.93652 5.63917 16.5451 0.0134195 0.148928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110016 0.0742052 0.0708812 0.142319 3.16194

CAGE analysis