Hb_000922_050

Information

Type -
Description -
Location Contig922: 67700-80656
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08140g
description POPTRDRAFT_806466; hypothetical protein
nr
ID XP_012080077.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067K4N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11483 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62478: 67160-67437 , PASA_asmbl_62479: 67496-80864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_050 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
2 Hb_000085_410 0.0606122782 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
3 Hb_003427_070 0.0852875462 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
4 Hb_001110_060 0.1030614857 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
5 Hb_000684_110 0.1086565049 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
6 Hb_003175_120 0.1093160923 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
7 Hb_025194_070 0.1114735525 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
8 Hb_084304_010 0.1115991262 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
9 Hb_009079_020 0.1118066671 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
10 Hb_001408_080 0.1119624345 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
11 Hb_001369_190 0.1140065946 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
12 Hb_002918_270 0.1176421565 - - PREDICTED: protein E6-like [Populus euphratica]
13 Hb_000739_190 0.1179671385 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_084812_010 0.1221195706 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
15 Hb_103225_030 0.1252884371 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
16 Hb_000742_290 0.1253303444 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_000175_370 0.1257192941 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
18 Hb_002260_140 0.1271721696 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004531_130 0.1284650559 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
20 Hb_009062_020 0.1285691252 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]

Gene co-expression network

sample Hb_000922_050 Hb_000922_050 Hb_000085_410 Hb_000085_410 Hb_000922_050--Hb_000085_410 Hb_003427_070 Hb_003427_070 Hb_000922_050--Hb_003427_070 Hb_001110_060 Hb_001110_060 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_025194_070 Hb_025194_070 Hb_000922_050--Hb_025194_070 Hb_000085_410--Hb_001110_060 Hb_001408_080 Hb_001408_080 Hb_000085_410--Hb_001408_080 Hb_000742_290 Hb_000742_290 Hb_000085_410--Hb_000742_290 Hb_000085_410--Hb_003427_070 Hb_004531_130 Hb_004531_130 Hb_000085_410--Hb_004531_130 Hb_084304_010 Hb_084304_010 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_000684_110--Hb_000739_190 Hb_004112_070 Hb_004112_070 Hb_000684_110--Hb_004112_070 Hb_000684_110--Hb_001110_060 Hb_000139_390 Hb_000139_390 Hb_000684_110--Hb_000139_390 Hb_135757_030 Hb_135757_030 Hb_003175_120--Hb_135757_030 Hb_009079_020 Hb_009079_020 Hb_003175_120--Hb_009079_020 Hb_002260_140 Hb_002260_140 Hb_003175_120--Hb_002260_140 Hb_001500_020 Hb_001500_020 Hb_003175_120--Hb_001500_020 Hb_006153_140 Hb_006153_140 Hb_003175_120--Hb_006153_140 Hb_021596_050 Hb_021596_050 Hb_003175_120--Hb_021596_050 Hb_005784_050 Hb_005784_050 Hb_025194_070--Hb_005784_050 Hb_025194_070--Hb_003427_070 Hb_023768_010 Hb_023768_010 Hb_025194_070--Hb_023768_010 Hb_025194_070--Hb_084304_010 Hb_004453_060 Hb_004453_060 Hb_025194_070--Hb_004453_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192475 2.24857 4.27487 13.9147 0.0540208 0.0743234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419508 0.065997 0 0.105807 2.1137

CAGE analysis