Hb_005784_050

Information

Type -
Description -
Location Contig5784: 40240-43916
Sequence    

Annotation

kegg
ID rcu:RCOM_1459940
description WD-repeat protein, putative
nr
ID XP_002517227.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q6LA54
description Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2
trembl
ID B9RU08
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1459940 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49737: 40069-40440 , PASA_asmbl_49738: 42121-43074 , PASA_asmbl_49740: 43639-44230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_050 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002053_020 0.1133366949 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
3 Hb_000175_370 0.1161625727 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
4 Hb_025194_070 0.1209916887 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
5 Hb_003125_110 0.121239298 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
6 Hb_000120_560 0.1236674669 - - protein with unknown function [Ricinus communis]
7 Hb_000646_040 0.1320387269 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
8 Hb_000139_390 0.1333079195 - - -
9 Hb_000922_050 0.1355997926 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
10 Hb_000614_120 0.1441636715 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
11 Hb_001417_090 0.1448488154 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
12 Hb_000085_410 0.1450057691 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
13 Hb_001216_060 0.1472326985 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002186_170 0.147925649 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
15 Hb_003023_030 0.1479871356 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
16 Hb_006351_050 0.1493539695 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
17 Hb_003427_070 0.150282576 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
18 Hb_004112_070 0.1507343716 - - -
19 Hb_001500_020 0.151528271 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000684_110 0.1517672221 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]

Gene co-expression network

sample Hb_005784_050 Hb_005784_050 Hb_002053_020 Hb_002053_020 Hb_005784_050--Hb_002053_020 Hb_000175_370 Hb_000175_370 Hb_005784_050--Hb_000175_370 Hb_025194_070 Hb_025194_070 Hb_005784_050--Hb_025194_070 Hb_003125_110 Hb_003125_110 Hb_005784_050--Hb_003125_110 Hb_000120_560 Hb_000120_560 Hb_005784_050--Hb_000120_560 Hb_000646_040 Hb_000646_040 Hb_005784_050--Hb_000646_040 Hb_002186_170 Hb_002186_170 Hb_002053_020--Hb_002186_170 Hb_002053_020--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002053_020--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_002053_020--Hb_000429_080 Hb_023768_010 Hb_023768_010 Hb_002053_020--Hb_023768_010 Hb_000175_370--Hb_002186_170 Hb_000175_370--Hb_000120_560 Hb_000139_390 Hb_000139_390 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_000922_050 Hb_000922_050 Hb_025194_070--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_025194_070--Hb_003427_070 Hb_025194_070--Hb_023768_010 Hb_084304_010 Hb_084304_010 Hb_025194_070--Hb_084304_010 Hb_004453_060 Hb_004453_060 Hb_025194_070--Hb_004453_060 Hb_080192_010 Hb_080192_010 Hb_003125_110--Hb_080192_010 Hb_000030_230 Hb_000030_230 Hb_003125_110--Hb_000030_230 Hb_000011_250 Hb_000011_250 Hb_003125_110--Hb_000011_250 Hb_003125_110--Hb_000646_040 Hb_001216_060 Hb_001216_060 Hb_003125_110--Hb_001216_060 Hb_000120_560--Hb_000646_040 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_003023_030 Hb_003023_030 Hb_000120_560--Hb_003023_030 Hb_000120_560--Hb_000139_390 Hb_000120_560--Hb_002186_170 Hb_003582_030 Hb_003582_030 Hb_000646_040--Hb_003582_030 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0100075 1.5572 1.5009 7.94267 0 0.0464153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.268445 0 0.00712044 1.13441

CAGE analysis