Hb_023768_010

Information

Type -
Description -
Location Contig23768: 6169-6405
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023768_010 0.0 - - -
2 Hb_002053_020 0.1162858508 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
3 Hb_025194_070 0.1233709182 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
4 Hb_002640_030 0.1306127443 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
5 Hb_001810_040 0.1320487759 - - -
6 Hb_000922_050 0.1439527683 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
7 Hb_003427_070 0.1454986401 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
8 Hb_004453_060 0.1462450406 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
9 Hb_000270_790 0.1485936223 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
10 Hb_002874_160 0.1490171418 - - conserved hypothetical protein [Ricinus communis]
11 Hb_084304_010 0.1502146478 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
12 Hb_150573_010 0.1507272844 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
13 Hb_000120_600 0.1532748778 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
14 Hb_000579_210 0.1545976673 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
15 Hb_001675_290 0.15476705 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
16 Hb_116091_010 0.1552972326 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
17 Hb_188281_010 0.1567492973 - - carboxylic ester hydrolase, putative [Ricinus communis]
18 Hb_000085_410 0.1589007807 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
19 Hb_005784_050 0.1610077237 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001417_090 0.1617612206 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]

Gene co-expression network

sample Hb_023768_010 Hb_023768_010 Hb_002053_020 Hb_002053_020 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070 Hb_002186_170 Hb_002186_170 Hb_002053_020--Hb_002186_170 Hb_000175_370 Hb_000175_370 Hb_002053_020--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002053_020--Hb_032299_020 Hb_005784_050 Hb_005784_050 Hb_002053_020--Hb_005784_050 Hb_000429_080 Hb_000429_080 Hb_002053_020--Hb_000429_080 Hb_025194_070--Hb_000922_050 Hb_025194_070--Hb_005784_050 Hb_025194_070--Hb_003427_070 Hb_084304_010 Hb_084304_010 Hb_025194_070--Hb_084304_010 Hb_004453_060 Hb_004453_060 Hb_025194_070--Hb_004453_060 Hb_002640_030--Hb_002186_170 Hb_002640_030--Hb_000175_370 Hb_002640_030--Hb_032299_020 Hb_002640_030--Hb_084304_010 Hb_002640_030--Hb_003427_070 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_004308_020 Hb_004308_020 Hb_001810_040--Hb_004308_020 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_001810_040--Hb_000429_080 Hb_000085_410 Hb_000085_410 Hb_000922_050--Hb_000085_410 Hb_000922_050--Hb_003427_070 Hb_001110_060 Hb_001110_060 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2815 246.677 224.399 1005.93 10.2279 6.32351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6588 12.4883 5.09756 6.43366 66.6296

CAGE analysis