Hb_002053_020

Information

Type -
Description -
Location Contig2053: 22875-24410
Sequence    

Annotation

kegg
ID rcu:RCOM_1681350
description multidrug resistance pump, putative
nr
ID XP_012087075.1
description PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
swissprot
ID Q9SIA5
description MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1
trembl
ID B9RBV0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1681350 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein dtx1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21150: 23016-23544 , PASA_asmbl_21151: 23976-24168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_020 0.0 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
2 Hb_002186_170 0.1002259441 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
3 Hb_000175_370 0.1100474243 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
4 Hb_032299_020 0.1114982501 - - tonoplast intrinsic protein, putative [Ricinus communis]
5 Hb_005784_050 0.1133366949 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000429_080 0.1142878769 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023768_010 0.1162858508 - - -
8 Hb_000201_050 0.1163950674 - - -
9 Hb_000098_230 0.1170114353 - - Potassium channel AKT2/3, putative [Ricinus communis]
10 Hb_000120_560 0.1180309029 - - protein with unknown function [Ricinus communis]
11 Hb_000646_040 0.1186591393 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
12 Hb_027746_030 0.1202666267 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012217_010 0.1216599455 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
14 Hb_007441_100 0.1273271248 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
15 Hb_001418_050 0.1276560342 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
16 Hb_000422_060 0.1314227569 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
17 Hb_025194_070 0.1346652711 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
18 Hb_032260_040 0.1362097725 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000579_210 0.1365416286 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
20 Hb_001584_250 0.1380221013 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_002053_020 Hb_002053_020 Hb_002186_170 Hb_002186_170 Hb_002053_020--Hb_002186_170 Hb_000175_370 Hb_000175_370 Hb_002053_020--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002053_020--Hb_032299_020 Hb_005784_050 Hb_005784_050 Hb_002053_020--Hb_005784_050 Hb_000429_080 Hb_000429_080 Hb_002053_020--Hb_000429_080 Hb_023768_010 Hb_023768_010 Hb_002053_020--Hb_023768_010 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_000120_560 Hb_000120_560 Hb_000175_370--Hb_000120_560 Hb_000139_390 Hb_000139_390 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_001584_250 Hb_001584_250 Hb_032299_020--Hb_001584_250 Hb_032299_020--Hb_000422_060 Hb_032299_020--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_005784_050--Hb_000175_370 Hb_025194_070 Hb_025194_070 Hb_005784_050--Hb_025194_070 Hb_003125_110 Hb_003125_110 Hb_005784_050--Hb_003125_110 Hb_005784_050--Hb_000120_560 Hb_005784_050--Hb_000646_040 Hb_000429_080--Hb_001584_250 Hb_009851_120 Hb_009851_120 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103125 3.00654 1.57841 12.2362 0.0508539 0.0968184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303894 0.119542 0 0.0381609 1.2016

CAGE analysis