Hb_002640_030

Information

Type -
Description -
Location Contig2640: 59181-61461
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05270g
description hypothetical protein
nr
ID XP_006375205.1
description hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID U5FP91
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05270g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27640: 60920-61448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002640_030 0.0 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
2 Hb_002186_170 0.1267111744 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
3 Hb_023768_010 0.1306127443 - - -
4 Hb_000175_370 0.1346492598 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
5 Hb_032299_020 0.1375089596 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_084304_010 0.1405586451 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
7 Hb_003427_070 0.1428882352 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
8 Hb_002053_020 0.1431346448 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
9 Hb_000120_560 0.1457247891 - - protein with unknown function [Ricinus communis]
10 Hb_000098_230 0.147437557 - - Potassium channel AKT2/3, putative [Ricinus communis]
11 Hb_006351_050 0.1481121826 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
12 Hb_000422_060 0.149251827 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
13 Hb_007919_010 0.1498458824 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000646_040 0.1536270166 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
15 Hb_000172_450 0.154049377 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
16 Hb_000139_390 0.1542780279 - - -
17 Hb_000188_140 0.1560884761 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
18 Hb_000429_080 0.1574463293 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001500_020 0.1575034888 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000614_120 0.1582820873 - - hypothetical protein JCGZ_17923 [Jatropha curcas]

Gene co-expression network

sample Hb_002640_030 Hb_002640_030 Hb_002186_170 Hb_002186_170 Hb_002640_030--Hb_002186_170 Hb_023768_010 Hb_023768_010 Hb_002640_030--Hb_023768_010 Hb_000175_370 Hb_000175_370 Hb_002640_030--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002640_030--Hb_032299_020 Hb_084304_010 Hb_084304_010 Hb_002640_030--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_002640_030--Hb_003427_070 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_002053_020 Hb_002053_020 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_023768_010--Hb_003427_070 Hb_000120_560 Hb_000120_560 Hb_000175_370--Hb_000120_560 Hb_000139_390 Hb_000139_390 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_001584_250 Hb_001584_250 Hb_032299_020--Hb_001584_250 Hb_032299_020--Hb_000422_060 Hb_000429_080 Hb_000429_080 Hb_032299_020--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_084304_010--Hb_003427_070 Hb_003777_150 Hb_003777_150 Hb_084304_010--Hb_003777_150 Hb_084304_010--Hb_006351_050 Hb_000188_140 Hb_000188_140 Hb_084304_010--Hb_000188_140 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003427_070--Hb_000922_050 Hb_003427_070--Hb_003777_150 Hb_000684_110 Hb_000684_110 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.3404 0.271559 1.72873 0.0127409 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0619823 0 0 0.0194626 0.153066

CAGE analysis