Hb_000429_080

Information

Type -
Description -
Location Contig429: 73036-73236
Sequence    

Annotation

kegg
ID rcu:RCOM_0091230
description hypothetical protein
nr
ID XP_002526737.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0091230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_L24.ab1: 72962-73405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001584_250 0.0762985106 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_032299_020 0.0773613324 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_009851_120 0.0884421638 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
5 Hb_006187_020 0.0963444793 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
6 Hb_001502_010 0.0963628124 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
7 Hb_000999_060 0.0968390249 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
8 Hb_002025_190 0.1015401244 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
9 Hb_000025_150 0.1040367824 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_005695_050 0.104711199 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
11 Hb_187906_010 0.1049210628 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
12 Hb_001766_140 0.1071817259 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
13 Hb_000438_180 0.1079720474 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_074100_010 0.1104462243 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
15 Hb_180293_010 0.113031348 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
16 Hb_008200_010 0.1133247472 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
17 Hb_002053_020 0.1142878769 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_000628_100 0.1158875855 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
19 Hb_029508_040 0.1165298502 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
20 Hb_011930_090 0.1167158308 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000429_080 Hb_000429_080 Hb_001584_250 Hb_001584_250 Hb_000429_080--Hb_001584_250 Hb_032299_020 Hb_032299_020 Hb_000429_080--Hb_032299_020 Hb_009851_120 Hb_009851_120 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060 Hb_001584_250--Hb_032299_020 Hb_000438_180 Hb_000438_180 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_000422_060 Hb_000422_060 Hb_032299_020--Hb_000422_060 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_009851_120--Hb_000999_060 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_001766_140 Hb_001766_140 Hb_006187_020--Hb_001766_140 Hb_005695_050 Hb_005695_050 Hb_006187_020--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_006187_020--Hb_027402_110 Hb_003442_020 Hb_003442_020 Hb_006187_020--Hb_003442_020 Hb_004157_060 Hb_004157_060 Hb_006187_020--Hb_004157_060 Hb_008200_010 Hb_008200_010 Hb_001502_010--Hb_008200_010 Hb_001502_010--Hb_027402_110 Hb_001502_010--Hb_000007_020 Hb_001502_010--Hb_000201_050 Hb_001502_010--Hb_001584_250 Hb_002025_190 Hb_002025_190 Hb_000999_060--Hb_002025_190 Hb_000999_060--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000999_060--Hb_029508_040 Hb_000999_060--Hb_187906_010 Hb_000628_100 Hb_000628_100 Hb_000999_060--Hb_000628_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03428 671.74 224.623 3186.1 4.10518 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.58484 13.8985 1.25765 2.14428 151.285

CAGE analysis