Hb_009851_120

Information

Type -
Description -
Location Contig9851: 105111-106857
Sequence    

Annotation

kegg
ID rcu:RCOM_1312170
description ring finger protein, putative
nr
ID XP_012086682.1
description PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
swissprot
ID Q84TF5
description RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1
trembl
ID A0A067JMS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20422 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 zinc finger protein rha4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64645: 105585-106905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_120 0.0 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
2 Hb_000999_060 0.0671773833 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
3 Hb_019299_010 0.0720470236 - - zinc finger protein, putative [Ricinus communis]
4 Hb_074100_010 0.0790592076 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_011930_090 0.0791337423 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
6 Hb_001584_250 0.0857131207 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_000429_080 0.0884421638 - - conserved hypothetical protein [Ricinus communis]
8 Hb_187906_010 0.0893608605 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
9 Hb_002025_190 0.0919163378 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
10 Hb_180293_010 0.0984577202 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
11 Hb_029508_040 0.1005574488 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
12 Hb_000628_100 0.1005900267 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
13 Hb_000438_180 0.1043006626 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000025_150 0.1045763819 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_005695_050 0.1064440309 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_032299_020 0.1104847071 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_000186_090 0.1127842984 - - ACC oxidase 1 [Hevea brasiliensis]
18 Hb_006061_020 0.1133827473 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
19 Hb_012217_010 0.1136752366 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
20 Hb_000754_010 0.1140460704 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_009851_120 Hb_009851_120 Hb_000999_060 Hb_000999_060 Hb_009851_120--Hb_000999_060 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_002025_190 Hb_002025_190 Hb_000999_060--Hb_002025_190 Hb_000999_060--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000999_060--Hb_029508_040 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000628_100 Hb_000628_100 Hb_000999_060--Hb_000628_100 Hb_019299_010--Hb_011930_090 Hb_019299_010--Hb_187906_010 Hb_000087_160 Hb_000087_160 Hb_019299_010--Hb_000087_160 Hb_012217_010 Hb_012217_010 Hb_019299_010--Hb_012217_010 Hb_001401_110 Hb_001401_110 Hb_019299_010--Hb_001401_110 Hb_074100_010--Hb_029508_040 Hb_074100_010--Hb_002025_190 Hb_000186_090 Hb_000186_090 Hb_074100_010--Hb_000186_090 Hb_074100_010--Hb_001584_250 Hb_011930_090--Hb_012217_010 Hb_011930_090--Hb_000087_160 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_000429_080--Hb_032299_020 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000429_080--Hb_000999_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.97693 0.687343 12.5087 0.0620104 0.0421057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.476445

CAGE analysis