Hb_002025_190

Information

Type -
Description -
Location Contig2025: 125391-129350
Sequence    

Annotation

kegg
ID vvi:100240845
description transcription factor bHLH111
nr
ID XP_012072425.1
description PREDICTED: transcription factor bHLH111 [Jatropha curcas]
swissprot
ID Q9FYJ6
description Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1
trembl
ID A0A067L2D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04857 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh111

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20576: 127237-129335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_190 0.0 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
2 Hb_000999_060 0.0635595866 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
3 Hb_000628_100 0.0779118914 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
4 Hb_074100_010 0.0787924645 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_001269_440 0.0889254324 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
6 Hb_009851_120 0.0919163378 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
7 Hb_000027_010 0.0941427404 - - -
8 Hb_029508_040 0.0976237081 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
9 Hb_001584_250 0.0986822912 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_001053_100 0.0990697652 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_000086_160 0.0993410203 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
12 Hb_000429_080 0.1015401244 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000025_150 0.1025645197 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
14 Hb_103931_010 0.1053887158 - - -
15 Hb_005695_050 0.1059018035 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_032299_020 0.1115824389 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_000164_250 0.112391019 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
18 Hb_024066_030 0.1127873457 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_003777_100 0.1156675142 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_000186_090 0.1176946599 - - ACC oxidase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002025_190 Hb_002025_190 Hb_000999_060 Hb_000999_060 Hb_002025_190--Hb_000999_060 Hb_000628_100 Hb_000628_100 Hb_002025_190--Hb_000628_100 Hb_074100_010 Hb_074100_010 Hb_002025_190--Hb_074100_010 Hb_001269_440 Hb_001269_440 Hb_002025_190--Hb_001269_440 Hb_009851_120 Hb_009851_120 Hb_002025_190--Hb_009851_120 Hb_000027_010 Hb_000027_010 Hb_002025_190--Hb_000027_010 Hb_000999_060--Hb_009851_120 Hb_000999_060--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000999_060--Hb_029508_040 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000999_060--Hb_000628_100 Hb_000164_250 Hb_000164_250 Hb_000628_100--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000628_100--Hb_003777_100 Hb_005695_050 Hb_005695_050 Hb_000628_100--Hb_005695_050 Hb_000628_100--Hb_009851_120 Hb_074100_010--Hb_029508_040 Hb_074100_010--Hb_009851_120 Hb_000186_090 Hb_000186_090 Hb_074100_010--Hb_000186_090 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250 Hb_002837_150 Hb_002837_150 Hb_001269_440--Hb_002837_150 Hb_000086_160 Hb_000086_160 Hb_001269_440--Hb_000086_160 Hb_005183_020 Hb_005183_020 Hb_001269_440--Hb_005183_020 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_003212_030 Hb_003212_030 Hb_001269_440--Hb_003212_030 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_006275_080 Hb_006275_080 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_000710_130 Hb_000710_130 Hb_000027_010--Hb_000710_130 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0151575 0.721189 0.174836 4.39829 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0174226 0.0918039

CAGE analysis