Hb_006052_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6052: 81251-81712
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10350g
description POPTRDRAFT_762524; hypothetical protein
nr
ID XP_011019235.1
description PREDICTED: transcription factor bHLH140-like [Populus euphratica]
swissprot
ID Q9M041
description Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1
trembl
ID B9HCY8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10350g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh140-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006052_080 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
2 Hb_000035_510 0.0899619179 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
3 Hb_000027_010 0.0905269844 - - -
4 Hb_005463_120 0.107303851 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_008727_090 0.1088031645 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
6 Hb_181191_010 0.1095049054 - - kinase, putative [Ricinus communis]
7 Hb_000203_120 0.1104701205 - - conserved hypothetical protein [Ricinus communis]
8 Hb_103931_010 0.1114826497 - - -
9 Hb_056718_010 0.1135302815 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
10 Hb_006275_080 0.1153508077 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
11 Hb_000363_100 0.1184851989 - - -
12 Hb_000710_130 0.1189265572 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_001104_290 0.1197494769 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
14 Hb_000203_110 0.1223288201 - - -
15 Hb_003747_080 0.1265802363 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_010638_030 0.1296233822 - - oleosin1 [Plukenetia volubilis]
17 Hb_011689_090 0.1306043461 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
18 Hb_000628_100 0.1315441403 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
19 Hb_002894_020 0.133053781 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
20 Hb_137821_010 0.1339225998 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]

Gene co-expression network

sample Hb_006052_080 Hb_006052_080 Hb_000035_510 Hb_000035_510 Hb_006052_080--Hb_000035_510 Hb_000027_010 Hb_000027_010 Hb_006052_080--Hb_000027_010 Hb_005463_120 Hb_005463_120 Hb_006052_080--Hb_005463_120 Hb_008727_090 Hb_008727_090 Hb_006052_080--Hb_008727_090 Hb_181191_010 Hb_181191_010 Hb_006052_080--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_006052_080--Hb_000203_120 Hb_001053_100 Hb_001053_100 Hb_000035_510--Hb_001053_100 Hb_103931_010 Hb_103931_010 Hb_000035_510--Hb_103931_010 Hb_000035_510--Hb_005463_120 Hb_000035_510--Hb_000027_010 Hb_000628_100 Hb_000628_100 Hb_000035_510--Hb_000628_100 Hb_006275_080 Hb_006275_080 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_000710_130 Hb_000710_130 Hb_000027_010--Hb_000710_130 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_137821_010 Hb_137821_010 Hb_005463_120--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_005463_120--Hb_003747_080 Hb_041067_010 Hb_041067_010 Hb_005463_120--Hb_041067_010 Hb_000527_090 Hb_000527_090 Hb_005463_120--Hb_000527_090 Hb_002217_480 Hb_002217_480 Hb_005463_120--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_005463_120--Hb_015085_010 Hb_008727_090--Hb_000203_120 Hb_008727_090--Hb_181191_010 Hb_000203_110 Hb_000203_110 Hb_008727_090--Hb_000203_110 Hb_008727_090--Hb_003747_080 Hb_000917_220 Hb_000917_220 Hb_008727_090--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_008727_090--Hb_018671_010 Hb_181191_010--Hb_000203_120 Hb_181191_010--Hb_000203_110 Hb_181191_010--Hb_003747_080 Hb_120496_010 Hb_120496_010 Hb_181191_010--Hb_120496_010 Hb_000363_100 Hb_000363_100 Hb_181191_010--Hb_000363_100 Hb_000203_120--Hb_000203_110 Hb_000203_120--Hb_003747_080 Hb_000203_120--Hb_000917_220 Hb_000203_120--Hb_018671_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652109 1.1435 0.580342 11.677 0.184175 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0504839 0

CAGE analysis