Hb_000710_130

Information

Type -
Description -
Location Contig710: 127471-129175
Sequence    

Annotation

kegg
ID rcu:RCOM_1314740
description metal ion binding protein, putative
nr
ID XP_002518950.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9RYY1
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1314740 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55230: 129135-129274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_130 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_000027_010 0.0785154379 - - -
3 Hb_000186_090 0.0802895487 - - ACC oxidase 1 [Hevea brasiliensis]
4 Hb_006275_080 0.0898900363 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
5 Hb_029508_040 0.0948577165 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
6 Hb_170597_010 0.0973999481 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
7 Hb_002277_020 0.098540859 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
8 Hb_011689_090 0.1015117951 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
9 Hb_116679_010 0.1018250391 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
10 Hb_000087_160 0.1061742132 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_159791_010 0.1105666453 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
12 Hb_000959_170 0.1152174491 - - Cell division protein kinase 7, putative [Ricinus communis]
13 Hb_007292_020 0.1155364503 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
14 Hb_002025_190 0.1177048718 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
15 Hb_002232_340 0.1185311798 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
16 Hb_006052_080 0.1189265572 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
17 Hb_000999_060 0.119382218 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
18 Hb_069384_010 0.1193935819 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
19 Hb_074100_010 0.1220928165 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
20 Hb_000188_140 0.122115284 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_130 Hb_000710_130 Hb_000027_010 Hb_000027_010 Hb_000710_130--Hb_000027_010 Hb_000186_090 Hb_000186_090 Hb_000710_130--Hb_000186_090 Hb_006275_080 Hb_006275_080 Hb_000710_130--Hb_006275_080 Hb_029508_040 Hb_029508_040 Hb_000710_130--Hb_029508_040 Hb_170597_010 Hb_170597_010 Hb_000710_130--Hb_170597_010 Hb_002277_020 Hb_002277_020 Hb_000710_130--Hb_002277_020 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080 Hb_000186_090--Hb_029508_040 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_006275_080--Hb_011689_090 Hb_006275_080--Hb_116679_010 Hb_006275_080--Hb_170597_010 Hb_006452_080 Hb_006452_080 Hb_006275_080--Hb_006452_080 Hb_029508_040--Hb_074100_010 Hb_029508_040--Hb_002277_020 Hb_000999_060 Hb_000999_060 Hb_029508_040--Hb_000999_060 Hb_002025_190 Hb_002025_190 Hb_029508_040--Hb_002025_190 Hb_170597_010--Hb_116679_010 Hb_170597_010--Hb_011689_090 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_170597_010--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_170597_010--Hb_003607_040 Hb_002277_020--Hb_000027_010 Hb_002277_020--Hb_074100_010 Hb_002894_020 Hb_002894_020 Hb_002277_020--Hb_002894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0324473 0.967703 0.654568 11.4867 0.0630456 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748067 0 0 0.0954928 0.23421

CAGE analysis