Hb_006275_080

Information

Type -
Description -
Location Contig6275: 106725-109986
Sequence    

Annotation

kegg
ID rcu:RCOM_1596180
description Auxin-induced protein 5NG4, putative
nr
ID XP_012071956.1
description PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
swissprot
ID Q94AP3
description Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1
trembl
ID E6NU65
description JHL18I08.9 protein OS=Jatropha curcas GN=JHL18I08.9 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein walls are thin 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51738: 108069-109652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_080 0.0 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
2 Hb_011689_090 0.0451462386 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
3 Hb_116679_010 0.0604124989 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
4 Hb_170597_010 0.0605148042 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_000027_010 0.0687987112 - - -
6 Hb_006452_080 0.0738121621 - - Nodulin, putative [Ricinus communis]
7 Hb_000710_130 0.0898900363 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_000754_010 0.0933222385 - - unnamed protein product [Vitis vinifera]
9 Hb_002232_340 0.0940371381 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
10 Hb_000527_090 0.094874014 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_003090_250 0.0964774107 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
12 Hb_003607_040 0.0967368479 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_003747_080 0.0968128725 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_000203_110 0.0975206046 - - -
15 Hb_006618_060 0.0993030928 - - PREDICTED: 21 kDa protein [Jatropha curcas]
16 Hb_181191_010 0.0995607959 - - kinase, putative [Ricinus communis]
17 Hb_007472_060 0.1004186654 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
18 Hb_007441_320 0.101584838 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
19 Hb_103942_020 0.104598068 - - unknown [Zea mays]
20 Hb_006061_020 0.1046067638 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006275_080 Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_006275_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006275_080--Hb_116679_010 Hb_170597_010 Hb_170597_010 Hb_006275_080--Hb_170597_010 Hb_000027_010 Hb_000027_010 Hb_006275_080--Hb_000027_010 Hb_006452_080 Hb_006452_080 Hb_006275_080--Hb_006452_080 Hb_000710_130 Hb_000710_130 Hb_006275_080--Hb_000710_130 Hb_011689_090--Hb_116679_010 Hb_011689_090--Hb_170597_010 Hb_011689_090--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_011689_090--Hb_003607_040 Hb_011689_090--Hb_000027_010 Hb_116679_010--Hb_170597_010 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_116679_010--Hb_000027_010 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_170597_010--Hb_006452_080 Hb_170597_010--Hb_003607_040 Hb_000027_010--Hb_000710_130 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_000710_130--Hb_000186_090 Hb_029508_040 Hb_029508_040 Hb_000710_130--Hb_029508_040 Hb_000710_130--Hb_170597_010 Hb_002277_020 Hb_002277_020 Hb_000710_130--Hb_002277_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.532545 16.2414 7.79336 245.325 0.440473 0.251074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0436356 0.601051 3.01301

CAGE analysis