Hb_002232_340

Information

Type -
Description -
Location Contig2232: 250205-258215
Sequence    

Annotation

kegg
ID tcc:TCM_039581
description Sodium transporter hkt1-like protein, putative
nr
ID XP_007014476.1
description Sodium transporter hkt1-like protein, putative [Theobroma cacao]
swissprot
ID Q84TI7
description Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1
trembl
ID A0A061GQH3
description Sodium transporter hkt1-like protein, putative OS=Theobroma cacao GN=TCM_039581 PE=4 SV=1
Gene Ontology
ID GO:0006812
description sodium transporter hkt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23127: 250135-257969 , PASA_asmbl_23128: 258061-258178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_340 0.0 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
2 Hb_006618_060 0.0499737819 - - PREDICTED: 21 kDa protein [Jatropha curcas]
3 Hb_006846_050 0.0627392599 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_170597_010 0.0632813138 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_006603_010 0.0800103167 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
6 Hb_006275_080 0.0940371381 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
7 Hb_025557_090 0.0972044928 - - hypothetical protein glysoja_034865 [Glycine soja]
8 Hb_006970_180 0.0976729957 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
9 Hb_007290_010 0.0993361574 - - cytochrome P450, putative [Ricinus communis]
10 Hb_085158_010 0.1005163542 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
11 Hb_116679_010 0.1016517343 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
12 Hb_004884_050 0.102486871 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
13 Hb_151436_010 0.104015991 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
14 Hb_001123_080 0.1040850937 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007292_020 0.1042824662 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
16 Hb_011689_090 0.1059020459 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
17 Hb_011218_010 0.1067791137 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
18 Hb_000628_080 0.107289214 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
19 Hb_000083_260 0.1096753751 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000754_010 0.111555719 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002232_340 Hb_002232_340 Hb_006618_060 Hb_006618_060 Hb_002232_340--Hb_006618_060 Hb_006846_050 Hb_006846_050 Hb_002232_340--Hb_006846_050 Hb_170597_010 Hb_170597_010 Hb_002232_340--Hb_170597_010 Hb_006603_010 Hb_006603_010 Hb_002232_340--Hb_006603_010 Hb_006275_080 Hb_006275_080 Hb_002232_340--Hb_006275_080 Hb_025557_090 Hb_025557_090 Hb_002232_340--Hb_025557_090 Hb_006618_060--Hb_006846_050 Hb_006618_060--Hb_006603_010 Hb_000628_080 Hb_000628_080 Hb_006618_060--Hb_000628_080 Hb_006618_060--Hb_170597_010 Hb_085158_010 Hb_085158_010 Hb_006618_060--Hb_085158_010 Hb_006846_050--Hb_006603_010 Hb_006846_050--Hb_085158_010 Hb_006970_180 Hb_006970_180 Hb_006846_050--Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_006846_050--Hb_151436_010 Hb_116679_010 Hb_116679_010 Hb_170597_010--Hb_116679_010 Hb_170597_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_170597_010--Hb_011689_090 Hb_006452_080 Hb_006452_080 Hb_170597_010--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_170597_010--Hb_003607_040 Hb_006603_010--Hb_006970_180 Hb_006603_010--Hb_151436_010 Hb_006603_010--Hb_085158_010 Hb_006889_010 Hb_006889_010 Hb_006603_010--Hb_006889_010 Hb_006275_080--Hb_011689_090 Hb_006275_080--Hb_116679_010 Hb_000027_010 Hb_000027_010 Hb_006275_080--Hb_000027_010 Hb_006275_080--Hb_006452_080 Hb_000710_130 Hb_000710_130 Hb_006275_080--Hb_000710_130 Hb_009158_010 Hb_009158_010 Hb_025557_090--Hb_009158_010 Hb_116349_080 Hb_116349_080 Hb_025557_090--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_025557_090--Hb_000155_030 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_000230_220 Hb_000230_220 Hb_025557_090--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_025557_090--Hb_000964_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.935937 1.2637 20.2531 0 0.0250353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.522514

CAGE analysis