Hb_006618_060

Information

Type -
Description -
Location Contig6618: 56252-56662
Sequence    

Annotation

kegg
ID rcu:RCOM_1679730
description 21 kDa protein precursor, putative
nr
ID XP_012087122.1
description PREDICTED: 21 kDa protein [Jatropha curcas]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JNZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20773 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_060 0.0 - - PREDICTED: 21 kDa protein [Jatropha curcas]
2 Hb_002232_340 0.0499737819 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
3 Hb_006846_050 0.0535267439 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_006603_010 0.0658421028 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
5 Hb_000628_080 0.0857887036 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
6 Hb_170597_010 0.0904242222 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
7 Hb_085158_010 0.0927757715 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
8 Hb_004884_050 0.0979152456 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
9 Hb_006970_180 0.0982106853 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
10 Hb_006275_080 0.0993030928 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
11 Hb_000905_130 0.1010664197 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
12 Hb_007290_010 0.1045390127 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002701_200 0.1047307425 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
14 Hb_017524_020 0.1047553262 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
15 Hb_151436_010 0.1052238303 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_006889_010 0.1073157052 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
17 Hb_004102_180 0.1077261341 - - zinc finger family protein [Populus trichocarpa]
18 Hb_007292_020 0.1080158985 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
19 Hb_003050_210 0.1085217019 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
20 Hb_011218_010 0.1102555616 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]

Gene co-expression network

sample Hb_006618_060 Hb_006618_060 Hb_002232_340 Hb_002232_340 Hb_006618_060--Hb_002232_340 Hb_006846_050 Hb_006846_050 Hb_006618_060--Hb_006846_050 Hb_006603_010 Hb_006603_010 Hb_006618_060--Hb_006603_010 Hb_000628_080 Hb_000628_080 Hb_006618_060--Hb_000628_080 Hb_170597_010 Hb_170597_010 Hb_006618_060--Hb_170597_010 Hb_085158_010 Hb_085158_010 Hb_006618_060--Hb_085158_010 Hb_002232_340--Hb_006846_050 Hb_002232_340--Hb_170597_010 Hb_002232_340--Hb_006603_010 Hb_006275_080 Hb_006275_080 Hb_002232_340--Hb_006275_080 Hb_025557_090 Hb_025557_090 Hb_002232_340--Hb_025557_090 Hb_006846_050--Hb_006603_010 Hb_006846_050--Hb_085158_010 Hb_006970_180 Hb_006970_180 Hb_006846_050--Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_006846_050--Hb_151436_010 Hb_006603_010--Hb_006970_180 Hb_006603_010--Hb_151436_010 Hb_006603_010--Hb_085158_010 Hb_006889_010 Hb_006889_010 Hb_006603_010--Hb_006889_010 Hb_103942_020 Hb_103942_020 Hb_000628_080--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_000628_080--Hb_001454_030 Hb_017524_020 Hb_017524_020 Hb_000628_080--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_000628_080--Hb_001277_390 Hb_000905_130 Hb_000905_130 Hb_000628_080--Hb_000905_130 Hb_116679_010 Hb_116679_010 Hb_170597_010--Hb_116679_010 Hb_170597_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_170597_010--Hb_011689_090 Hb_006452_080 Hb_006452_080 Hb_170597_010--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_170597_010--Hb_003607_040 Hb_000431_050 Hb_000431_050 Hb_085158_010--Hb_000431_050 Hb_085158_010--Hb_151436_010 Hb_085158_010--Hb_006970_180 Hb_085158_010--Hb_006889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159937 6.72006 13.9631 214.316 0.156313 0.508292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.148661 0 0.0633793 3.95452

CAGE analysis