Hb_000905_130

Information

Type -
Description -
Location Contig905: 134647-135363
Sequence    

Annotation

kegg
ID rcu:RCOM_1525390
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012065531.1
description PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID A0A067L4U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16734 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dna-damage-repair toleration protein drt100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_130 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
2 Hb_000270_590 0.0707956179 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
3 Hb_000375_210 0.0739253137 - - -
4 Hb_003050_210 0.0783184278 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
5 Hb_000628_080 0.0822794946 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
6 Hb_000296_030 0.0829043498 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
7 Hb_006846_050 0.084249403 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_000224_070 0.0904408938 - - -
9 Hb_000431_040 0.0905209127 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
10 Hb_002701_200 0.091314849 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
11 Hb_000381_140 0.0927816454 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
12 Hb_017524_020 0.0946484817 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_006603_010 0.0977518745 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
14 Hb_000622_140 0.0979032624 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002028_250 0.0985768449 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
16 Hb_002601_030 0.0988328042 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
17 Hb_085158_010 0.0994008199 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
18 Hb_000389_120 0.1005642794 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
19 Hb_000325_090 0.1007260877 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
20 Hb_006618_060 0.1010664197 - - PREDICTED: 21 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000905_130 Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_000905_130--Hb_000270_590 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_003050_210 Hb_003050_210 Hb_000905_130--Hb_003050_210 Hb_000628_080 Hb_000628_080 Hb_000905_130--Hb_000628_080 Hb_000296_030 Hb_000296_030 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_000270_590--Hb_003050_210 Hb_002701_200 Hb_002701_200 Hb_000270_590--Hb_002701_200 Hb_000270_590--Hb_000296_030 Hb_000381_140 Hb_000381_140 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020 Hb_002028_250 Hb_002028_250 Hb_000375_210--Hb_002028_250 Hb_002757_020 Hb_002757_020 Hb_000375_210--Hb_002757_020 Hb_000389_120 Hb_000389_120 Hb_000375_210--Hb_000389_120 Hb_000431_040 Hb_000431_040 Hb_000375_210--Hb_000431_040 Hb_014508_020 Hb_014508_020 Hb_000375_210--Hb_014508_020 Hb_002601_030 Hb_002601_030 Hb_000375_210--Hb_002601_030 Hb_006603_010 Hb_006603_010 Hb_003050_210--Hb_006603_010 Hb_003050_210--Hb_006846_050 Hb_003050_210--Hb_000375_210 Hb_003050_210--Hb_002701_200 Hb_103942_020 Hb_103942_020 Hb_000628_080--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_000628_080--Hb_001454_030 Hb_000628_080--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_000628_080--Hb_001277_390 Hb_006618_060 Hb_006618_060 Hb_000628_080--Hb_006618_060 Hb_000269_050 Hb_000269_050 Hb_000296_030--Hb_000269_050 Hb_000224_070 Hb_000224_070 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_000296_030--Hb_002701_200 Hb_006846_050--Hb_006618_060 Hb_006846_050--Hb_006603_010 Hb_085158_010 Hb_085158_010 Hb_006846_050--Hb_085158_010 Hb_002232_340 Hb_002232_340 Hb_006846_050--Hb_002232_340 Hb_006970_180 Hb_006970_180 Hb_006846_050--Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_006846_050--Hb_151436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0678263 1.21835 8.63857 167.234 0 0.218735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32539 1.5865

CAGE analysis