Hb_000296_030

Information

Type -
Description -
Location Contig296: 63472-63889
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08920g
description hypothetical protein
nr
ID XP_012075279.1
description PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30937: 63429-63833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000296_030 0.0 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
2 Hb_000905_130 0.0829043498 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
3 Hb_000269_050 0.0848166061 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
4 Hb_000270_590 0.0964897953 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
5 Hb_000224_070 0.0996843052 - - -
6 Hb_001597_040 0.1010864979 - - -
7 Hb_002701_200 0.1018653105 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
8 Hb_003058_090 0.1023269516 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
9 Hb_002215_020 0.1040783108 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
10 Hb_000628_080 0.1043325725 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
11 Hb_000645_040 0.1054563681 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_003252_030 0.1076678224 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_000622_140 0.1140991879 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000381_140 0.1154665967 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
15 Hb_050786_010 0.1204238436 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
16 Hb_000325_090 0.1209801503 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
17 Hb_001277_390 0.1222772856 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_118941_010 0.1244377322 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_001804_020 0.1246942671 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
20 Hb_103942_020 0.125316244 - - unknown [Zea mays]

Gene co-expression network

sample Hb_000296_030 Hb_000296_030 Hb_000905_130 Hb_000905_130 Hb_000296_030--Hb_000905_130 Hb_000269_050 Hb_000269_050 Hb_000296_030--Hb_000269_050 Hb_000270_590 Hb_000270_590 Hb_000296_030--Hb_000270_590 Hb_000224_070 Hb_000224_070 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_002701_200 Hb_002701_200 Hb_000296_030--Hb_002701_200 Hb_000905_130--Hb_000270_590 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_003050_210 Hb_003050_210 Hb_000905_130--Hb_003050_210 Hb_000628_080 Hb_000628_080 Hb_000905_130--Hb_000628_080 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_003058_090 Hb_003058_090 Hb_000269_050--Hb_003058_090 Hb_000381_140 Hb_000381_140 Hb_000269_050--Hb_000381_140 Hb_000269_050--Hb_000224_070 Hb_002874_100 Hb_002874_100 Hb_000269_050--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_000269_050--Hb_007426_100 Hb_000270_590--Hb_003050_210 Hb_000270_590--Hb_002701_200 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_000224_070--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_120496_010 Hb_120496_010 Hb_000224_070--Hb_120496_010 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040 Hb_053058_010 Hb_053058_010 Hb_001597_040--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_001597_040--Hb_001634_070 Hb_050786_010 Hb_050786_010 Hb_001597_040--Hb_050786_010 Hb_009896_010 Hb_009896_010 Hb_001597_040--Hb_009896_010 Hb_008493_020 Hb_008493_020 Hb_001597_040--Hb_008493_020 Hb_002186_190 Hb_002186_190 Hb_001597_040--Hb_002186_190 Hb_002701_200--Hb_000628_080 Hb_002701_200--Hb_000905_130 Hb_001804_020 Hb_001804_020 Hb_002701_200--Hb_001804_020 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.42177 6.03855 226.784 0 1.66975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.39161 1.09724

CAGE analysis