Hb_000381_140

Information

Type -
Description -
Location Contig381: 227825-229607
Sequence    

Annotation

kegg
ID cic:CICLE_v10017595mg
description hypothetical protein
nr
ID XP_012087608.1
description PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
swissprot
ID Q5E930
description S-type anion channel SLAH1 OS=Arabidopsis thaliana GN=SLAH1 PE=2 SV=1
trembl
ID V4U9K7
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017595mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description s-type anion channel slah1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000381_140 0.0 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
2 Hb_000269_050 0.0787479264 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
3 Hb_000224_070 0.0863663289 - - -
4 Hb_000224_050 0.0908392767 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000905_130 0.0927816454 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
6 Hb_002186_120 0.0940743113 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
7 Hb_000277_040 0.0959621726 - - -
8 Hb_018671_010 0.0965890229 - - -
9 Hb_000270_590 0.0984588946 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
10 Hb_120496_010 0.0990751332 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
11 Hb_000203_110 0.1027690267 - - -
12 Hb_001277_390 0.1085636947 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
13 Hb_000363_100 0.1089602702 - - -
14 Hb_001104_290 0.1095585847 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
15 Hb_003050_210 0.1098165045 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
16 Hb_000099_110 0.110123495 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
17 Hb_003252_030 0.111566435 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_007292_020 0.1125571469 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
19 Hb_006846_050 0.1130767493 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_001247_050 0.1142137371 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]

Gene co-expression network

sample Hb_000381_140 Hb_000381_140 Hb_000269_050 Hb_000269_050 Hb_000381_140--Hb_000269_050 Hb_000224_070 Hb_000224_070 Hb_000381_140--Hb_000224_070 Hb_000224_050 Hb_000224_050 Hb_000381_140--Hb_000224_050 Hb_000905_130 Hb_000905_130 Hb_000381_140--Hb_000905_130 Hb_002186_120 Hb_002186_120 Hb_000381_140--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_000381_140--Hb_000277_040 Hb_003058_090 Hb_003058_090 Hb_000269_050--Hb_003058_090 Hb_000296_030 Hb_000296_030 Hb_000269_050--Hb_000296_030 Hb_000269_050--Hb_000224_070 Hb_002874_100 Hb_002874_100 Hb_000269_050--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_000269_050--Hb_007426_100 Hb_001277_390 Hb_001277_390 Hb_000224_070--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_120496_010 Hb_120496_010 Hb_000224_070--Hb_120496_010 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040 Hb_018671_010 Hb_018671_010 Hb_000224_050--Hb_018671_010 Hb_000224_050--Hb_002186_120 Hb_178968_010 Hb_178968_010 Hb_000224_050--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_000224_050--Hb_003540_010 Hb_000224_020 Hb_000224_020 Hb_000224_050--Hb_000224_020 Hb_000917_220 Hb_000917_220 Hb_000224_050--Hb_000917_220 Hb_000270_590 Hb_000270_590 Hb_000905_130--Hb_000270_590 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_003050_210 Hb_003050_210 Hb_000905_130--Hb_003050_210 Hb_000628_080 Hb_000628_080 Hb_000905_130--Hb_000628_080 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_002186_120--Hb_018671_010 Hb_002186_120--Hb_000277_040 Hb_002186_120--Hb_178968_010 Hb_000053_150 Hb_000053_150 Hb_002186_120--Hb_000053_150 Hb_002186_120--Hb_003540_010 Hb_000277_040--Hb_018671_010 Hb_012545_020 Hb_012545_020 Hb_000277_040--Hb_012545_020 Hb_000099_110 Hb_000099_110 Hb_000277_040--Hb_000099_110 Hb_000277_040--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_000277_040--Hb_010812_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.231003 0.608433 9.66896 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.094662 0

CAGE analysis