Hb_000270_590

Information

Type -
Description -
Location Contig270: 488836-489496
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07820g
description POPTRDRAFT_814282; hypothetical protein
nr
ID XP_002318020.1
description hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID A9PAA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07820g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28241: 488777-489697
cDNA
(Sanger)
(ID:Location)		 007_B24.ab1: 488777-489672 , 016_C20.ab1: 488777-489697 , 044_C07.ab1: 488777-489672

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_590 0.0 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
2 Hb_000905_130 0.0707956179 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
3 Hb_003050_210 0.0823419919 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
4 Hb_002701_200 0.0918737105 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
5 Hb_000296_030 0.0964897953 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
6 Hb_000381_140 0.0984588946 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
7 Hb_017524_020 0.107316212 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
8 Hb_000375_210 0.1082805976 - - -
9 Hb_000628_080 0.1118010249 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
10 Hb_000269_050 0.1135590945 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
11 Hb_000224_070 0.113821367 - - -
12 Hb_002028_250 0.1174626817 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
13 Hb_006603_010 0.1181267618 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
14 Hb_006618_060 0.119493596 - - PREDICTED: 21 kDa protein [Jatropha curcas]
15 Hb_002601_030 0.1197516496 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
16 Hb_006846_050 0.1214536387 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_000366_070 0.1220834634 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
18 Hb_014508_020 0.1228624122 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
19 Hb_000325_090 0.1237864885 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
20 Hb_000389_120 0.1243911226 - - hypothetical protein JCGZ_20066 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_590 Hb_000270_590 Hb_000905_130 Hb_000905_130 Hb_000270_590--Hb_000905_130 Hb_003050_210 Hb_003050_210 Hb_000270_590--Hb_003050_210 Hb_002701_200 Hb_002701_200 Hb_000270_590--Hb_002701_200 Hb_000296_030 Hb_000296_030 Hb_000270_590--Hb_000296_030 Hb_000381_140 Hb_000381_140 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_000905_130--Hb_003050_210 Hb_000628_080 Hb_000628_080 Hb_000905_130--Hb_000628_080 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_006603_010 Hb_006603_010 Hb_003050_210--Hb_006603_010 Hb_003050_210--Hb_006846_050 Hb_003050_210--Hb_000375_210 Hb_003050_210--Hb_002701_200 Hb_002701_200--Hb_000628_080 Hb_002701_200--Hb_000905_130 Hb_001804_020 Hb_001804_020 Hb_002701_200--Hb_001804_020 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050 Hb_002701_200--Hb_000296_030 Hb_000269_050 Hb_000269_050 Hb_000296_030--Hb_000269_050 Hb_000224_070 Hb_000224_070 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_000381_140--Hb_000269_050 Hb_000381_140--Hb_000224_070 Hb_000224_050 Hb_000224_050 Hb_000381_140--Hb_000224_050 Hb_000381_140--Hb_000905_130 Hb_002186_120 Hb_002186_120 Hb_000381_140--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_000381_140--Hb_000277_040 Hb_017524_020--Hb_000628_080 Hb_001277_390 Hb_001277_390 Hb_017524_020--Hb_001277_390 Hb_017524_020--Hb_000905_130 Hb_103942_020 Hb_103942_020 Hb_017524_020--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_017524_020--Hb_001454_030 Hb_017524_020--Hb_000224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128382 1.63608 10.7505 176.765 1.00991 0.65658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30629 0 0 2.08184 0.778021

CAGE analysis