Hb_006603_010

Information

Type -
Description -
Location Contig6603: 3290-3681
Sequence    

Annotation

kegg
ID rcu:RCOM_0866510
description neutral alpha-glucosidase ab precursor, putative (EC:3.2.1.20)
nr
ID XP_002519886.1
description neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
swissprot
ID Q9F234
description Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1
trembl
ID B9S1M1
description Neutral alpha-glucosidase ab, putative OS=Ricinus communis GN=RCOM_0866510 PE=3 SV=1
Gene Ontology
ID GO:0009507
description neutral alpha-glucosidase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52939: 735-3371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006603_010 0.0 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
2 Hb_006846_050 0.0542178121 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_006970_180 0.0577554555 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
4 Hb_006618_060 0.0658421028 - - PREDICTED: 21 kDa protein [Jatropha curcas]
5 Hb_151436_010 0.0698049268 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
6 Hb_085158_010 0.0699882919 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
7 Hb_006889_010 0.070523777 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
8 Hb_002232_340 0.0800103167 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
9 Hb_000431_050 0.0810920176 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007292_060 0.0846432321 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
11 Hb_005539_330 0.0856191802 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
12 Hb_003152_010 0.0866855864 - - -
13 Hb_011218_010 0.0887712923 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
14 Hb_003050_210 0.0889463023 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
15 Hb_004102_180 0.0936788585 - - zinc finger family protein [Populus trichocarpa]
16 Hb_000964_120 0.0960178656 - - DNA-damage-inducible protein f, putative [Ricinus communis]
17 Hb_000905_130 0.0977518745 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
18 Hb_000175_600 0.0990576051 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
19 Hb_008021_080 0.0999123497 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
20 Hb_022250_140 0.1005046266 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006603_010 Hb_006603_010 Hb_006846_050 Hb_006846_050 Hb_006603_010--Hb_006846_050 Hb_006970_180 Hb_006970_180 Hb_006603_010--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060 Hb_151436_010 Hb_151436_010 Hb_006603_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006603_010--Hb_085158_010 Hb_006889_010 Hb_006889_010 Hb_006603_010--Hb_006889_010 Hb_006846_050--Hb_006618_060 Hb_006846_050--Hb_085158_010 Hb_002232_340 Hb_002232_340 Hb_006846_050--Hb_002232_340 Hb_006846_050--Hb_006970_180 Hb_006846_050--Hb_151436_010 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_006618_060--Hb_002232_340 Hb_000628_080 Hb_000628_080 Hb_006618_060--Hb_000628_080 Hb_170597_010 Hb_170597_010 Hb_006618_060--Hb_170597_010 Hb_006618_060--Hb_085158_010 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140 Hb_085158_010--Hb_000431_050 Hb_085158_010--Hb_006889_010 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_006889_010--Hb_151436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.58934 33.2521 435.256 0.832356 0.449272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28737 14.6384

CAGE analysis