Hb_005539_330

Information

Type -
Description -
Location Contig5539: 262184-264217
Sequence    

Annotation

kegg
ID rcu:RCOM_0463580
description Auxin-induced protein 5NG4, putative
nr
ID XP_012085336.1
description PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
swissprot
ID F4IJ08
description WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1
trembl
ID B9T2A3
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0463580 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at4g08300-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48404: 262238-262723 , PASA_asmbl_48405: 262934-263714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_330 0.0 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
2 Hb_006889_010 0.0698131047 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
3 Hb_000012_340 0.0710998472 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
4 Hb_085158_010 0.0714491938 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_000429_070 0.0816458285 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
6 Hb_000431_050 0.0835247376 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006603_010 0.0856191802 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
8 Hb_001401_130 0.0895955428 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
9 Hb_004162_150 0.0902639018 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
10 Hb_006846_050 0.0907397172 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_006970_180 0.0908191069 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
12 Hb_151436_010 0.091192371 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
13 Hb_015183_090 0.0922659069 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_001634_050 0.09237466 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
15 Hb_012180_070 0.0934863618 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002186_190 0.0947858723 - - -
17 Hb_000331_660 0.0974217005 - - PREDICTED: vignain [Jatropha curcas]
18 Hb_001454_030 0.0982052779 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
19 Hb_103942_020 0.0983371594 - - unknown [Zea mays]
20 Hb_005396_020 0.0988520036 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_005539_330 Hb_005539_330 Hb_006889_010 Hb_006889_010 Hb_005539_330--Hb_006889_010 Hb_000012_340 Hb_000012_340 Hb_005539_330--Hb_000012_340 Hb_085158_010 Hb_085158_010 Hb_005539_330--Hb_085158_010 Hb_000429_070 Hb_000429_070 Hb_005539_330--Hb_000429_070 Hb_000431_050 Hb_000431_050 Hb_005539_330--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_005539_330--Hb_006603_010 Hb_006970_180 Hb_006970_180 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_151436_010 Hb_151436_010 Hb_006889_010--Hb_151436_010 Hb_006889_010--Hb_085158_010 Hb_006889_010--Hb_006603_010 Hb_000816_170 Hb_000816_170 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_003607_040 Hb_003607_040 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_085158_010--Hb_000431_050 Hb_085158_010--Hb_151436_010 Hb_085158_010--Hb_006970_180 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_085158_010--Hb_006603_010 Hb_000429_070--Hb_001401_130 Hb_001386_070 Hb_001386_070 Hb_000429_070--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_000429_070--Hb_012180_070 Hb_000485_050 Hb_000485_050 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_000429_070--Hb_003925_010 Hb_000431_050--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_000431_050--Hb_000331_380 Hb_000431_050--Hb_006970_180 Hb_002073_210 Hb_002073_210 Hb_000431_050--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_000431_050--Hb_000352_210 Hb_006603_010--Hb_006846_050 Hb_006603_010--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060 Hb_006603_010--Hb_151436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0832587 0.318491 9.34079 0.0375077 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0289027 0.370335

CAGE analysis