Hb_053058_010

Information

Type -
Description -
Location Contig53058: 1282-1609
Sequence    

Annotation

kegg
ID rcu:RCOM_1345220
description hypothetical protein
nr
ID XP_002515220.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1345220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053058_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008493_020 0.0468785502 - - linamarase [Manihot esculenta]
3 Hb_009896_010 0.0497618784 - - ABC transporter G family member 15 [Morus notabilis]
4 Hb_001634_070 0.0689393918 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001597_040 0.0690439604 - - -
6 Hb_050786_010 0.0721296752 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
7 Hb_060416_010 0.0738096177 - - conserved hypothetical protein [Ricinus communis]
8 Hb_103942_010 0.0752974966 - - rab5A-like protein [Trichinella spiralis]
9 Hb_009470_010 0.0786778361 - - -
10 Hb_000103_210 0.0839808398 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
11 Hb_001322_200 0.0840674418 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000203_130 0.0842244411 - - -
13 Hb_000645_040 0.0857591505 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_001817_050 0.0861130004 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
15 Hb_002235_340 0.0868210016 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000637_090 0.0879098806 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
17 Hb_153199_010 0.0909556694 - - -
18 Hb_001956_170 0.0936047405 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
19 Hb_003092_010 0.0936837653 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
20 Hb_007677_010 0.0948210764 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]

Gene co-expression network

sample Hb_053058_010 Hb_053058_010 Hb_008493_020 Hb_008493_020 Hb_053058_010--Hb_008493_020 Hb_009896_010 Hb_009896_010 Hb_053058_010--Hb_009896_010 Hb_001634_070 Hb_001634_070 Hb_053058_010--Hb_001634_070 Hb_001597_040 Hb_001597_040 Hb_053058_010--Hb_001597_040 Hb_050786_010 Hb_050786_010 Hb_053058_010--Hb_050786_010 Hb_060416_010 Hb_060416_010 Hb_053058_010--Hb_060416_010 Hb_008493_020--Hb_060416_010 Hb_008493_020--Hb_009896_010 Hb_008493_020--Hb_001634_070 Hb_103942_010 Hb_103942_010 Hb_008493_020--Hb_103942_010 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_009896_010--Hb_001634_070 Hb_001634_070--Hb_060416_010 Hb_001634_070--Hb_001597_040 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020 Hb_001597_040--Hb_050786_010 Hb_001597_040--Hb_009896_010 Hb_001597_040--Hb_008493_020 Hb_002186_190 Hb_002186_190 Hb_001597_040--Hb_002186_190 Hb_050786_010--Hb_008493_020 Hb_050786_010--Hb_060416_010 Hb_000645_040 Hb_000645_040 Hb_050786_010--Hb_000645_040 Hb_050786_010--Hb_001634_070 Hb_000002_190 Hb_000002_190 Hb_060416_010--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_060416_010--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_060416_010--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_060416_010--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_060416_010--Hb_000011_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.473561 60.2384 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.218666 0.64536

CAGE analysis