Hb_001956_170

Information

Type -
Description -
Location Contig1956: 132783-133067
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24950g
description POPTRDRAFT_549147; hypothetical protein
nr
ID XP_002299860.1
description hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GJA2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24950g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein tprxl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_170 0.0 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
2 Hb_007677_010 0.0143311813 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
3 Hb_000637_090 0.0299710404 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
4 Hb_009896_010 0.0656613762 - - ABC transporter G family member 15 [Morus notabilis]
5 Hb_009470_010 0.065770261 - - -
6 Hb_003925_010 0.0724416621 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_002186_190 0.0762847375 - - -
8 Hb_103942_010 0.079550255 - - rab5A-like protein [Trichinella spiralis]
9 Hb_008493_020 0.0900404889 - - linamarase [Manihot esculenta]
10 Hb_000485_050 0.0920957992 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
11 Hb_000429_070 0.0935947463 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
12 Hb_053058_010 0.0936047405 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027472_250 0.0986251716 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
14 Hb_001634_070 0.105689043 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004162_150 0.1072255384 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
16 Hb_001401_130 0.1086313695 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
17 Hb_009620_080 0.1090775155 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
18 Hb_001597_040 0.1103678501 - - -
19 Hb_001386_070 0.1126477199 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
20 Hb_000617_070 0.1143164725 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]

Gene co-expression network

sample Hb_001956_170 Hb_001956_170 Hb_007677_010 Hb_007677_010 Hb_001956_170--Hb_007677_010 Hb_000637_090 Hb_000637_090 Hb_001956_170--Hb_000637_090 Hb_009896_010 Hb_009896_010 Hb_001956_170--Hb_009896_010 Hb_009470_010 Hb_009470_010 Hb_001956_170--Hb_009470_010 Hb_003925_010 Hb_003925_010 Hb_001956_170--Hb_003925_010 Hb_002186_190 Hb_002186_190 Hb_001956_170--Hb_002186_190 Hb_007677_010--Hb_000637_090 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_009896_010 Hb_007677_010--Hb_002186_190 Hb_000637_090--Hb_009896_010 Hb_000637_090--Hb_003925_010 Hb_000637_090--Hb_009470_010 Hb_000637_090--Hb_002186_190 Hb_008493_020 Hb_008493_020 Hb_009896_010--Hb_008493_020 Hb_053058_010 Hb_053058_010 Hb_009896_010--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_009896_010--Hb_001634_070 Hb_009470_010--Hb_002186_190 Hb_009470_010--Hb_009896_010 Hb_009470_010--Hb_003925_010 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.154476 64.6705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.52405

CAGE analysis