Hb_029508_040

Information

Type -
Description -
Location Contig29508: 46919-54630
Sequence    

Annotation

kegg
ID vvi:100262967
description mechanosensitive ion channel protein 10-like
nr
ID XP_012077019.1
description PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067KCM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07463 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029508_040 0.0 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
2 Hb_074100_010 0.0523093868 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
3 Hb_000186_090 0.0571875678 - - ACC oxidase 1 [Hevea brasiliensis]
4 Hb_002277_020 0.0825682911 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
5 Hb_000999_060 0.0911651304 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
6 Hb_000710_130 0.0948577165 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_002025_190 0.0976237081 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
8 Hb_000027_010 0.0991956306 - - -
9 Hb_009851_120 0.1005574488 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
10 Hb_000959_170 0.1051421929 - - Cell division protein kinase 7, putative [Ricinus communis]
11 Hb_000579_210 0.1087885086 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
12 Hb_032299_020 0.1094487344 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_069384_010 0.1122080727 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
14 Hb_000188_140 0.1154594956 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
15 Hb_001584_250 0.1158463226 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_187906_010 0.1161428999 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
17 Hb_000429_080 0.1165298502 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000087_160 0.1167633151 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000230_220 0.1203653396 - - conserved hypothetical protein [Ricinus communis]
20 Hb_170597_010 0.1211015465 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]

Gene co-expression network

sample Hb_029508_040 Hb_029508_040 Hb_074100_010 Hb_074100_010 Hb_029508_040--Hb_074100_010 Hb_000186_090 Hb_000186_090 Hb_029508_040--Hb_000186_090 Hb_002277_020 Hb_002277_020 Hb_029508_040--Hb_002277_020 Hb_000999_060 Hb_000999_060 Hb_029508_040--Hb_000999_060 Hb_000710_130 Hb_000710_130 Hb_029508_040--Hb_000710_130 Hb_002025_190 Hb_002025_190 Hb_029508_040--Hb_002025_190 Hb_074100_010--Hb_000999_060 Hb_074100_010--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_074100_010--Hb_009851_120 Hb_074100_010--Hb_000186_090 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_000186_090--Hb_000710_130 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_002277_020--Hb_000710_130 Hb_000027_010 Hb_000027_010 Hb_002277_020--Hb_000027_010 Hb_002277_020--Hb_074100_010 Hb_002894_020 Hb_002894_020 Hb_002277_020--Hb_002894_020 Hb_000999_060--Hb_002025_190 Hb_000999_060--Hb_009851_120 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000628_100 Hb_000628_100 Hb_000999_060--Hb_000628_100 Hb_000710_130--Hb_000027_010 Hb_006275_080 Hb_006275_080 Hb_000710_130--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_000710_130--Hb_170597_010 Hb_002025_190--Hb_000628_100 Hb_001269_440 Hb_001269_440 Hb_002025_190--Hb_001269_440 Hb_002025_190--Hb_009851_120 Hb_002025_190--Hb_000027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.800295 0.468451 6.04329 0 0.0203972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176531 0 0 0.0661935 0.147637

CAGE analysis