Hb_000628_100

Information

Type -
Description -
Location Contig628: 148714-148989
Sequence    

Annotation

kegg
ID mtr:MTR_1g019660
description hypothetical protein
nr
ID XP_003589210.1
description hypothetical protein MTR_1g019660 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7I3M6
description EF-hand protein OS=Medicago truncatula GN=MTR_1g019660 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_100 0.0 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
2 Hb_002025_190 0.0779118914 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
3 Hb_000999_060 0.0944159313 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
4 Hb_000164_250 0.0958261536 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
5 Hb_003777_100 0.0971246411 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_005695_050 0.0980621054 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
7 Hb_009851_120 0.1005900267 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
8 Hb_001053_100 0.1058838034 - - DNA-damage-inducible protein f, putative [Ricinus communis]
9 Hb_000172_260 0.1081696144 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
10 Hb_032280_010 0.1084626616 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
11 Hb_103931_010 0.1090734671 - - -
12 Hb_000429_080 0.1158875855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000086_160 0.1196368403 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
14 Hb_000027_010 0.1198029677 - - -
15 Hb_074100_010 0.1199238383 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_010261_050 0.1203542351 - - DNA binding protein, putative [Ricinus communis]
17 Hb_024066_030 0.1214508789 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
18 Hb_002374_070 0.1219562429 - - amino acid transporter, putative [Ricinus communis]
19 Hb_001502_010 0.123926524 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
20 Hb_008200_010 0.1248977252 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000628_100 Hb_000628_100 Hb_002025_190 Hb_002025_190 Hb_000628_100--Hb_002025_190 Hb_000999_060 Hb_000999_060 Hb_000628_100--Hb_000999_060 Hb_000164_250 Hb_000164_250 Hb_000628_100--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000628_100--Hb_003777_100 Hb_005695_050 Hb_005695_050 Hb_000628_100--Hb_005695_050 Hb_009851_120 Hb_009851_120 Hb_000628_100--Hb_009851_120 Hb_002025_190--Hb_000999_060 Hb_074100_010 Hb_074100_010 Hb_002025_190--Hb_074100_010 Hb_001269_440 Hb_001269_440 Hb_002025_190--Hb_001269_440 Hb_002025_190--Hb_009851_120 Hb_000027_010 Hb_000027_010 Hb_002025_190--Hb_000027_010 Hb_000999_060--Hb_009851_120 Hb_000999_060--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000999_060--Hb_029508_040 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000164_250--Hb_003777_100 Hb_032280_010 Hb_032280_010 Hb_000164_250--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_000164_250--Hb_000172_260 Hb_041067_010 Hb_041067_010 Hb_000164_250--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000164_250--Hb_103931_010 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_003777_100--Hb_010261_050 Hb_003777_100--Hb_032280_010 Hb_003777_100--Hb_000172_260 Hb_003442_020 Hb_003442_020 Hb_003777_100--Hb_003442_020 Hb_003839_060 Hb_003839_060 Hb_003777_100--Hb_003839_060 Hb_008200_010 Hb_008200_010 Hb_005695_050--Hb_008200_010 Hb_006187_020 Hb_006187_020 Hb_005695_050--Hb_006187_020 Hb_002374_070 Hb_002374_070 Hb_005695_050--Hb_002374_070 Hb_001766_140 Hb_001766_140 Hb_005695_050--Hb_001766_140 Hb_027402_110 Hb_027402_110 Hb_005695_050--Hb_027402_110 Hb_023536_020 Hb_023536_020 Hb_005695_050--Hb_023536_020 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_009851_120--Hb_074100_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.565394 19.8796 4.15381 99.5514 0.615877 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.0802

CAGE analysis