Hb_008200_010

Information

Type -
Description -
Location Contig8200: 20286-23370
Sequence    

Annotation

kegg
ID rcu:RCOM_0867870
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012072650.1
description PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C6W5
description ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1
trembl
ID A0A067KZZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06712 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59581: 20061-23400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008200_010 0.0 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
2 Hb_001502_010 0.0633930689 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
3 Hb_006590_040 0.0649249713 - - amino acid permease, putative [Ricinus communis]
4 Hb_002374_070 0.0696896822 - - amino acid transporter, putative [Ricinus communis]
5 Hb_005695_050 0.0745326736 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
6 Hb_027402_110 0.0808188125 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
7 Hb_000007_020 0.0817541603 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
8 Hb_004125_080 0.0831584511 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
9 Hb_008566_070 0.0918092397 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002116_020 0.0930088202 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
11 Hb_002411_070 0.0956659453 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
12 Hb_001584_250 0.1020508631 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_000201_050 0.1052453327 - - -
14 Hb_023536_020 0.106751904 - - Nicotianamine synthase, putative [Ricinus communis]
15 Hb_001766_140 0.1085576412 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
16 Hb_168031_010 0.1096717105 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
17 Hb_000429_080 0.1133247472 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006187_020 0.122612799 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
19 Hb_000245_070 0.1242792859 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
20 Hb_000628_100 0.1248977252 - - hypothetical protein MTR_1g019660 [Medicago truncatula]

Gene co-expression network

sample Hb_008200_010 Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_008200_010--Hb_001502_010 Hb_006590_040 Hb_006590_040 Hb_008200_010--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_008200_010--Hb_002374_070 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_001502_010--Hb_027402_110 Hb_001502_010--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_001502_010--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_001502_010--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_001502_010--Hb_000429_080 Hb_002116_020 Hb_002116_020 Hb_006590_040--Hb_002116_020 Hb_004125_080 Hb_004125_080 Hb_006590_040--Hb_004125_080 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_002411_070 Hb_002411_070 Hb_006590_040--Hb_002411_070 Hb_006590_040--Hb_002374_070 Hb_002374_070--Hb_004125_080 Hb_002374_070--Hb_002411_070 Hb_023536_020 Hb_023536_020 Hb_002374_070--Hb_023536_020 Hb_002374_070--Hb_002116_020 Hb_006187_020 Hb_006187_020 Hb_005695_050--Hb_006187_020 Hb_005695_050--Hb_002374_070 Hb_001766_140 Hb_001766_140 Hb_005695_050--Hb_001766_140 Hb_005695_050--Hb_027402_110 Hb_005695_050--Hb_023536_020 Hb_027402_110--Hb_001766_140 Hb_001675_260 Hb_001675_260 Hb_027402_110--Hb_001675_260 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_000007_020--Hb_006590_040 Hb_000007_020--Hb_001584_250 Hb_000007_020--Hb_002116_020 Hb_000007_020--Hb_000201_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104355 19.5684 2.74324 56.0315 0.128498 0.130843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123768 2.27935

CAGE analysis