Hb_027402_110

Information

Type -
Description -
Location Contig27402: 86320-86857
Sequence    

Annotation

kegg
ID rcu:RCOM_1471750
description hypothetical protein
nr
ID XP_012080277.1
description PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11637 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28703: 86327-86931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_110 0.0 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
2 Hb_001766_140 0.0779998359 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
3 Hb_001675_260 0.0793508817 - - nitrate transporter, putative [Ricinus communis]
4 Hb_008200_010 0.0808188125 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
5 Hb_001502_010 0.0897634103 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
6 Hb_001255_030 0.0931746745 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
7 Hb_005695_050 0.0967166573 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
8 Hb_004157_060 0.0983975971 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
9 Hb_001318_180 0.102386945 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
10 Hb_123887_010 0.107096366 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_004125_080 0.1093594897 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
12 Hb_000007_020 0.1103210579 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_008566_070 0.1104885233 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006187_020 0.1110909949 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
15 Hb_006590_040 0.1142996138 - - amino acid permease, putative [Ricinus communis]
16 Hb_003529_010 0.1143690203 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
17 Hb_002374_070 0.1144723255 - - amino acid transporter, putative [Ricinus communis]
18 Hb_004007_190 0.1227557951 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
19 Hb_001584_250 0.1228029673 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_000429_080 0.1261347402 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027402_110 Hb_027402_110 Hb_001766_140 Hb_001766_140 Hb_027402_110--Hb_001766_140 Hb_001675_260 Hb_001675_260 Hb_027402_110--Hb_001675_260 Hb_008200_010 Hb_008200_010 Hb_027402_110--Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_027402_110--Hb_001502_010 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_005695_050 Hb_005695_050 Hb_027402_110--Hb_005695_050 Hb_006187_020 Hb_006187_020 Hb_001766_140--Hb_006187_020 Hb_001766_140--Hb_005695_050 Hb_004157_060 Hb_004157_060 Hb_001766_140--Hb_004157_060 Hb_000429_080 Hb_000429_080 Hb_001766_140--Hb_000429_080 Hb_001766_140--Hb_008200_010 Hb_003529_010 Hb_003529_010 Hb_001675_260--Hb_003529_010 Hb_001318_180 Hb_001318_180 Hb_001675_260--Hb_001318_180 Hb_004007_190 Hb_004007_190 Hb_001675_260--Hb_004007_190 Hb_001675_260--Hb_004157_060 Hb_000604_050 Hb_000604_050 Hb_001675_260--Hb_000604_050 Hb_008200_010--Hb_001502_010 Hb_006590_040 Hb_006590_040 Hb_008200_010--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_008200_010--Hb_002374_070 Hb_008200_010--Hb_005695_050 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_001502_010--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_001502_010--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_001502_010--Hb_001584_250 Hb_001502_010--Hb_000429_080 Hb_103632_010 Hb_103632_010 Hb_001255_030--Hb_103632_010 Hb_004757_040 Hb_004757_040 Hb_001255_030--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_001255_030--Hb_002837_150 Hb_001255_030--Hb_001675_260 Hb_000860_030 Hb_000860_030 Hb_001255_030--Hb_000860_030 Hb_005695_050--Hb_006187_020 Hb_005695_050--Hb_002374_070 Hb_023536_020 Hb_023536_020 Hb_005695_050--Hb_023536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.4511 2.47313 28.6971 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.337859 0.975924

CAGE analysis