Hb_000860_030

Information

Type -
Description -
Location Contig860: 46608-47567
Sequence    

Annotation

kegg
ID rcu:RCOM_1619950
description hypothetical protein
nr
ID XP_002512053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619950 PE=4 SV=1
Gene Ontology
ID GO:0005737
description myb-like protein x-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 038_G24.ab1: 46450-47229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000860_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001322_010 0.0855249506 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
3 Hb_000705_070 0.108030008 - - conserved hypothetical protein [Ricinus communis]
4 Hb_022597_010 0.1084821273 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
5 Hb_001255_030 0.1195926954 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
6 Hb_156850_040 0.1241273044 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
7 Hb_000172_150 0.1302289833 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
8 Hb_005056_120 0.1303670055 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000149_020 0.1310060727 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
10 Hb_000638_110 0.1350246106 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
11 Hb_006026_020 0.1360810222 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
12 Hb_003582_010 0.1367702541 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
13 Hb_000740_080 0.1386032926 - - -
14 Hb_000206_270 0.1402191724 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_009225_070 0.1422938023 - - tonoplast intrinsic protein, putative [Ricinus communis]
16 Hb_103632_010 0.1434492303 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_004757_040 0.1455712308 - - -
18 Hb_004970_100 0.1489754318 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
19 Hb_002783_210 0.1508505765 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
20 Hb_002768_040 0.152019585 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000860_030 Hb_000860_030 Hb_001322_010 Hb_001322_010 Hb_000860_030--Hb_001322_010 Hb_000705_070 Hb_000705_070 Hb_000860_030--Hb_000705_070 Hb_022597_010 Hb_022597_010 Hb_000860_030--Hb_022597_010 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_156850_040 Hb_156850_040 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_001322_010--Hb_022597_010 Hb_001322_010--Hb_000705_070 Hb_001322_010--Hb_156850_040 Hb_000638_110 Hb_000638_110 Hb_001322_010--Hb_000638_110 Hb_000740_080 Hb_000740_080 Hb_001322_010--Hb_000740_080 Hb_000840_220 Hb_000840_220 Hb_000705_070--Hb_000840_220 Hb_000705_070--Hb_000638_110 Hb_003582_010 Hb_003582_010 Hb_000705_070--Hb_003582_010 Hb_001775_060 Hb_001775_060 Hb_000705_070--Hb_001775_060 Hb_000897_010 Hb_000897_010 Hb_022597_010--Hb_000897_010 Hb_022597_010--Hb_000638_110 Hb_005245_030 Hb_005245_030 Hb_022597_010--Hb_005245_030 Hb_005736_110 Hb_005736_110 Hb_022597_010--Hb_005736_110 Hb_103632_010 Hb_103632_010 Hb_001255_030--Hb_103632_010 Hb_027402_110 Hb_027402_110 Hb_001255_030--Hb_027402_110 Hb_004757_040 Hb_004757_040 Hb_001255_030--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_001255_030--Hb_002837_150 Hb_001675_260 Hb_001675_260 Hb_001255_030--Hb_001675_260 Hb_156850_040--Hb_000638_110 Hb_156850_040--Hb_022597_010 Hb_002277_020 Hb_002277_020 Hb_156850_040--Hb_002277_020 Hb_156850_040--Hb_003582_010 Hb_000270_530 Hb_000270_530 Hb_000172_150--Hb_000270_530 Hb_000172_150--Hb_001255_030 Hb_000378_030 Hb_000378_030 Hb_000172_150--Hb_000378_030 Hb_000172_150--Hb_004757_040 Hb_000172_150--Hb_000705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290929 9.20099 3.18496 37.2219 0.577882 0.210658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0769912 2.68473 1.79655

CAGE analysis