Hb_001775_060

Information

Type -
Description -
Location Contig1775: 73359-74308
Sequence    

Annotation

kegg
ID rcu:RCOM_1180730
description hypothetical protein
nr
ID XP_002533607.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FK81
description Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1
trembl
ID B9T5T8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180730 PE=4 SV=1
Gene Ontology
ID GO:0009507
description stress responsive a b barrel domain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17034: 73534-74355
cDNA
(Sanger)
(ID:Location)		 003_N24.ab1: 73534-74240 , 011_H04.ab1: 73534-74274 , 047_I04.ab1: 73534-74248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_034688_030 0.1092817579 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
3 Hb_002627_010 0.1199981131 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
4 Hb_000705_070 0.1243724154 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003126_120 0.1249102523 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
6 Hb_002592_070 0.1281444641 - - hypothetical protein VITISV_020993 [Vitis vinifera]
7 Hb_003582_010 0.1293465984 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
8 Hb_001013_060 0.1303355164 - - -
9 Hb_001322_010 0.1303878939 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
10 Hb_000720_060 0.133764168 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
11 Hb_011314_010 0.1340693517 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
12 Hb_000563_570 0.1349365048 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
13 Hb_022597_010 0.1369201408 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
14 Hb_000203_150 0.1377789965 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
15 Hb_000897_010 0.1410891961 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
16 Hb_000069_630 0.1469437179 - - hypothetical protein [Hevea brasiliensis]
17 Hb_003504_010 0.1487720604 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
18 Hb_012553_030 0.1496426892 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_009225_070 0.1497257508 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_016120_020 0.1520590372 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001775_060 Hb_001775_060 Hb_034688_030 Hb_034688_030 Hb_001775_060--Hb_034688_030 Hb_002627_010 Hb_002627_010 Hb_001775_060--Hb_002627_010 Hb_000705_070 Hb_000705_070 Hb_001775_060--Hb_000705_070 Hb_003126_120 Hb_003126_120 Hb_001775_060--Hb_003126_120 Hb_002592_070 Hb_002592_070 Hb_001775_060--Hb_002592_070 Hb_003582_010 Hb_003582_010 Hb_001775_060--Hb_003582_010 Hb_034688_030--Hb_003126_120 Hb_034688_030--Hb_002627_010 Hb_034688_030--Hb_002592_070 Hb_002000_100 Hb_002000_100 Hb_034688_030--Hb_002000_100 Hb_000453_290 Hb_000453_290 Hb_034688_030--Hb_000453_290 Hb_002627_010--Hb_002592_070 Hb_027405_010 Hb_027405_010 Hb_002627_010--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002627_010--Hb_022693_090 Hb_061054_010 Hb_061054_010 Hb_002627_010--Hb_061054_010 Hb_001322_010 Hb_001322_010 Hb_000705_070--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_000705_070--Hb_000860_030 Hb_000840_220 Hb_000840_220 Hb_000705_070--Hb_000840_220 Hb_000638_110 Hb_000638_110 Hb_000705_070--Hb_000638_110 Hb_000705_070--Hb_003582_010 Hb_003126_120--Hb_002000_100 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_001360_020 Hb_001360_020 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320 Hb_000468_050 Hb_000468_050 Hb_002592_070--Hb_000468_050 Hb_002592_070--Hb_000453_290 Hb_012553_030 Hb_012553_030 Hb_002592_070--Hb_012553_030 Hb_009225_070 Hb_009225_070 Hb_002592_070--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_002592_070--Hb_022693_090 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_003582_010--Hb_001322_010 Hb_001013_060 Hb_001013_060 Hb_003582_010--Hb_001013_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.6176 650.256 87.0805 2260.04 1.43932 2.32183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62317 0.891885 0.200963 409.396 206.782

CAGE analysis