Hb_034688_030

Information

Type -
Description -
Location Contig34688: 17809-18600
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12150g
description POPTRDRAFT_564544; hypothetical protein
nr
ID XP_012082119.1
description PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18358 PE=4 SV=1
Gene Ontology
ID GO:0004674
description copper-binding periplasmic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36162: 18577-19092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034688_030 0.0 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
2 Hb_003126_120 0.0839442969 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
3 Hb_002627_010 0.0943091705 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
4 Hb_001775_060 0.1092817579 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002592_070 0.1169052644 - - hypothetical protein VITISV_020993 [Vitis vinifera]
6 Hb_002000_100 0.1180266935 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
7 Hb_000453_290 0.1183278689 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
8 Hb_000705_050 0.1202914533 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
9 Hb_022693_090 0.120924555 - - glycosyltransferase, putative [Ricinus communis]
10 Hb_000367_320 0.1288701272 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007403_100 0.130112883 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
12 Hb_002007_330 0.1304341404 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
13 Hb_011314_010 0.1330381718 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
14 Hb_001360_020 0.1364268027 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
15 Hb_142056_010 0.1392069973 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
16 Hb_000069_630 0.1428759092 - - hypothetical protein [Hevea brasiliensis]
17 Hb_186495_010 0.1430194136 - - Phosphoprotein phosphatase [Theobroma cacao]
18 Hb_027405_010 0.1444854479 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
19 Hb_009225_070 0.1480552699 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_000897_010 0.1505570561 - - hypothetical protein JCGZ_13196 [Jatropha curcas]

Gene co-expression network

sample Hb_034688_030 Hb_034688_030 Hb_003126_120 Hb_003126_120 Hb_034688_030--Hb_003126_120 Hb_002627_010 Hb_002627_010 Hb_034688_030--Hb_002627_010 Hb_001775_060 Hb_001775_060 Hb_034688_030--Hb_001775_060 Hb_002592_070 Hb_002592_070 Hb_034688_030--Hb_002592_070 Hb_002000_100 Hb_002000_100 Hb_034688_030--Hb_002000_100 Hb_000453_290 Hb_000453_290 Hb_034688_030--Hb_000453_290 Hb_003126_120--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_001360_020 Hb_001360_020 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320 Hb_002627_010--Hb_002592_070 Hb_027405_010 Hb_027405_010 Hb_002627_010--Hb_027405_010 Hb_002627_010--Hb_022693_090 Hb_061054_010 Hb_061054_010 Hb_002627_010--Hb_061054_010 Hb_002627_010--Hb_001775_060 Hb_000705_070 Hb_000705_070 Hb_001775_060--Hb_000705_070 Hb_001775_060--Hb_003126_120 Hb_001775_060--Hb_002592_070 Hb_003582_010 Hb_003582_010 Hb_001775_060--Hb_003582_010 Hb_000468_050 Hb_000468_050 Hb_002592_070--Hb_000468_050 Hb_002592_070--Hb_000453_290 Hb_012553_030 Hb_012553_030 Hb_002592_070--Hb_012553_030 Hb_009225_070 Hb_009225_070 Hb_002592_070--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_002592_070--Hb_022693_090 Hb_002007_330 Hb_002007_330 Hb_002000_100--Hb_002007_330 Hb_142056_010 Hb_142056_010 Hb_002000_100--Hb_142056_010 Hb_002000_100--Hb_001360_020 Hb_007403_100 Hb_007403_100 Hb_002000_100--Hb_007403_100 Hb_008731_010 Hb_008731_010 Hb_002000_100--Hb_008731_010 Hb_002384_030 Hb_002384_030 Hb_002000_100--Hb_002384_030 Hb_000453_290--Hb_022693_090 Hb_000453_290--Hb_000468_050 Hb_000453_290--Hb_002000_100 Hb_000453_290--Hb_027405_010 Hb_000453_290--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126504 2.1382 0.389894 8.70644 0 0.0887507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.65487 1.72547

CAGE analysis