Hb_011314_010

Information

Type -
Description -
Location Contig11314: 2639-6425
Sequence    

Annotation

kegg
ID rcu:RCOM_1045320
description TMV resistance protein N, putative
nr
ID XP_012076900.1
description PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011314_010 0.0 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
2 Hb_009225_070 0.0860002113 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_022693_090 0.0982784085 - - glycosyltransferase, putative [Ricinus communis]
4 Hb_004374_040 0.1053751897 - - PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
5 Hb_003126_120 0.1073789758 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
6 Hb_004785_170 0.1099434098 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_003582_030 0.1102828784 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
8 Hb_000468_050 0.1127331711 - - -
9 Hb_000378_030 0.1158849682 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010217_020 0.1187897102 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
11 Hb_002592_070 0.1206654931 - - hypothetical protein VITISV_020993 [Vitis vinifera]
12 Hb_000349_280 0.1268589544 - - conserved hypothetical protein [Ricinus communis]
13 Hb_103632_010 0.1275775234 - - triacylglycerol lipase, putative [Ricinus communis]
14 Hb_000422_060 0.1292439415 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
15 Hb_011985_020 0.1305119873 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
16 Hb_017700_030 0.1305977327 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
17 Hb_000453_290 0.1327770118 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
18 Hb_034688_030 0.1330381718 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
19 Hb_006618_100 0.13335162 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
20 Hb_001775_060 0.1340693517 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011314_010 Hb_011314_010 Hb_009225_070 Hb_009225_070 Hb_011314_010--Hb_009225_070 Hb_022693_090 Hb_022693_090 Hb_011314_010--Hb_022693_090 Hb_004374_040 Hb_004374_040 Hb_011314_010--Hb_004374_040 Hb_003126_120 Hb_003126_120 Hb_011314_010--Hb_003126_120 Hb_004785_170 Hb_004785_170 Hb_011314_010--Hb_004785_170 Hb_003582_030 Hb_003582_030 Hb_011314_010--Hb_003582_030 Hb_000468_050 Hb_000468_050 Hb_009225_070--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_009225_070--Hb_002592_070 Hb_000816_150 Hb_000816_150 Hb_009225_070--Hb_000816_150 Hb_012553_030 Hb_012553_030 Hb_009225_070--Hb_012553_030 Hb_009225_070--Hb_022693_090 Hb_000453_290 Hb_000453_290 Hb_022693_090--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_022693_090--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_022693_090--Hb_001360_020 Hb_022693_090--Hb_002592_070 Hb_004374_040--Hb_004785_170 Hb_002213_050 Hb_002213_050 Hb_004374_040--Hb_002213_050 Hb_011985_020 Hb_011985_020 Hb_004374_040--Hb_011985_020 Hb_000563_570 Hb_000563_570 Hb_004374_040--Hb_000563_570 Hb_004374_040--Hb_009225_070 Hb_034688_030 Hb_034688_030 Hb_003126_120--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_003126_120--Hb_002000_100 Hb_003126_120--Hb_022693_090 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320 Hb_008948_010 Hb_008948_010 Hb_004785_170--Hb_008948_010 Hb_004785_170--Hb_011985_020 Hb_004785_170--Hb_000468_050 Hb_001318_230 Hb_001318_230 Hb_004785_170--Hb_001318_230 Hb_000098_230 Hb_000098_230 Hb_003582_030--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_000646_040 Hb_000646_040 Hb_003582_030--Hb_000646_040 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_002186_170 Hb_002186_170 Hb_003582_030--Hb_002186_170 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204657 5.00839 1.00571 16.3928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.16804 2.62815

CAGE analysis