Hb_012553_030

Information

Type -
Description -
Location Contig12553: 25330-27982
Sequence    

Annotation

kegg
ID rcu:RCOM_0275330
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002532228.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID Q9LUH3
description MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1
trembl
ID B9T1V9
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0275330 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07822: 26772-27775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012553_030 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_000468_050 0.0656643553 - - -
3 Hb_002592_070 0.0781955489 - - hypothetical protein VITISV_020993 [Vitis vinifera]
4 Hb_015884_010 0.0784952908 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
5 Hb_103541_010 0.079797043 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
6 Hb_000090_020 0.082706577 - - acyltransferase, putative [Ricinus communis]
7 Hb_009225_070 0.0912754674 - - tonoplast intrinsic protein, putative [Ricinus communis]
8 Hb_000714_070 0.1178292479 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
9 Hb_000816_150 0.1214494409 - - oligopeptide transporter, putative [Ricinus communis]
10 Hb_000453_290 0.1231906733 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
11 Hb_000563_570 0.1259813297 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
12 Hb_000203_150 0.128218069 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
13 Hb_000732_100 0.1300390505 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
14 Hb_183209_020 0.1303513718 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_002598_020 0.1332563245 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
16 Hb_000149_020 0.1339006526 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
17 Hb_003939_090 0.1339347696 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_000537_090 0.1350472605 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004785_170 0.1378648054 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
20 Hb_000571_060 0.1389679888 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]

Gene co-expression network

sample Hb_012553_030 Hb_012553_030 Hb_000468_050 Hb_000468_050 Hb_012553_030--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_012553_030--Hb_002592_070 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_103541_010 Hb_103541_010 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_009225_070 Hb_009225_070 Hb_012553_030--Hb_009225_070 Hb_000468_050--Hb_009225_070 Hb_000816_150 Hb_000816_150 Hb_000468_050--Hb_000816_150 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170 Hb_002592_070--Hb_000453_290 Hb_002592_070--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_022693_090 Hb_022693_090 Hb_002592_070--Hb_022693_090 Hb_003939_090 Hb_003939_090 Hb_015884_010--Hb_003939_090 Hb_010642_010 Hb_010642_010 Hb_015884_010--Hb_010642_010 Hb_000714_070 Hb_000714_070 Hb_015884_010--Hb_000714_070 Hb_015884_010--Hb_103541_010 Hb_015884_010--Hb_000468_050 Hb_103541_010--Hb_000090_020 Hb_050898_010 Hb_050898_010 Hb_103541_010--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_103541_010--Hb_183209_020 Hb_000537_090 Hb_000537_090 Hb_103541_010--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_103541_010--Hb_002598_020 Hb_000090_020--Hb_002598_020 Hb_000090_020--Hb_000537_090 Hb_000732_100 Hb_000732_100 Hb_000090_020--Hb_000732_100 Hb_001318_230 Hb_001318_230 Hb_000090_020--Hb_001318_230 Hb_009225_070--Hb_000816_150 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_009225_070--Hb_022693_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14914 0.313944 2.481 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.446368 0.348959

CAGE analysis