Hb_001318_230

Information

Type -
Description -
Location Contig1318: 180472-184684
Sequence    

Annotation

kegg
ID rcu:RCOM_1345360
description Boron transporter, putative
nr
ID XP_002515224.1
description Boron transporter, putative [Ricinus communis]
swissprot
ID Q9M1P7
description Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1
trembl
ID B9RN85
description Boron transporter, putative OS=Ricinus communis GN=RCOM_1345360 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09223: 180499-184592 , PASA_asmbl_09224: 184609-184797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_230 0.0 - - Boron transporter, putative [Ricinus communis]
2 Hb_000732_100 0.0676601986 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
3 Hb_001907_050 0.0852927685 - - Receptor like protein 6, putative [Theobroma cacao]
4 Hb_000537_090 0.0898121608 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002598_020 0.1039194486 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
6 Hb_000090_020 0.106348195 - - acyltransferase, putative [Ricinus communis]
7 Hb_004785_170 0.1107046375 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_114733_010 0.1121282932 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
9 Hb_001269_530 0.1135515066 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_011985_020 0.1251747288 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
11 Hb_000816_150 0.1256129034 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_173107_020 0.126543838 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
13 Hb_008948_010 0.1267523528 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
14 Hb_002335_010 0.1295634005 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_103541_010 0.1309863357 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
16 Hb_000816_050 0.1331336065 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_000384_020 0.1363780697 - - sucrose phosphate syntase, putative [Ricinus communis]
18 Hb_001913_030 0.1383793454 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_002250_140 0.1388973198 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
20 Hb_017700_030 0.1395215007 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_230 Hb_001318_230 Hb_000732_100 Hb_000732_100 Hb_001318_230--Hb_000732_100 Hb_001907_050 Hb_001907_050 Hb_001318_230--Hb_001907_050 Hb_000537_090 Hb_000537_090 Hb_001318_230--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_001318_230--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_001318_230--Hb_000090_020 Hb_004785_170 Hb_004785_170 Hb_001318_230--Hb_004785_170 Hb_000732_100--Hb_000537_090 Hb_114733_010 Hb_114733_010 Hb_000732_100--Hb_114733_010 Hb_001269_530 Hb_001269_530 Hb_000732_100--Hb_001269_530 Hb_000732_100--Hb_000090_020 Hb_173107_020 Hb_173107_020 Hb_000732_100--Hb_173107_020 Hb_000041_160 Hb_000041_160 Hb_001907_050--Hb_000041_160 Hb_030949_010 Hb_030949_010 Hb_001907_050--Hb_030949_010 Hb_002335_010 Hb_002335_010 Hb_001907_050--Hb_002335_010 Hb_123078_010 Hb_123078_010 Hb_001907_050--Hb_123078_010 Hb_027892_050 Hb_027892_050 Hb_001907_050--Hb_027892_050 Hb_001913_030 Hb_001913_030 Hb_000537_090--Hb_001913_030 Hb_000537_090--Hb_002598_020 Hb_000537_090--Hb_001269_530 Hb_001013_080 Hb_001013_080 Hb_000537_090--Hb_001013_080 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_103541_010 Hb_103541_010 Hb_000090_020--Hb_103541_010 Hb_012553_030 Hb_012553_030 Hb_000090_020--Hb_012553_030 Hb_000090_020--Hb_000537_090 Hb_004374_040 Hb_004374_040 Hb_004785_170--Hb_004374_040 Hb_008948_010 Hb_008948_010 Hb_004785_170--Hb_008948_010 Hb_011985_020 Hb_011985_020 Hb_004785_170--Hb_011985_020 Hb_000468_050 Hb_000468_050 Hb_004785_170--Hb_000468_050 Hb_011314_010 Hb_011314_010 Hb_004785_170--Hb_011314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0719369 40.0595 5.15716 54.6941 0.173843 0.170426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0820037 0.0129058 0.0492741 7.28926 19.7538

CAGE analysis