Hb_000041_160

Information

Type -
Description -
Location Contig41: 207297-210374
Sequence    

Annotation

kegg
ID bvg:104907627
description uncharacterized LOC104907627
nr
ID XP_010694888.1
description PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID I1IWC2
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI5G03654 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_160 0.0 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
2 Hb_123078_010 0.0727893933 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
3 Hb_002335_010 0.0794932813 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
4 Hb_105814_020 0.0862496014 - - berberine bridge enzyme [Hevea brasiliensis]
5 Hb_027474_010 0.0918633775 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
6 Hb_004730_010 0.1027209783 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
7 Hb_000956_100 0.1062538362 - - Cucumisin precursor, putative [Ricinus communis]
8 Hb_000813_090 0.1074520728 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
9 Hb_001907_050 0.1089931375 - - Receptor like protein 6, putative [Theobroma cacao]
10 Hb_001269_530 0.1230714344 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_027892_050 0.1235929809 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
12 Hb_001046_040 0.1359215581 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002250_140 0.1402746285 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
14 Hb_004218_290 0.1464968715 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
15 Hb_001318_230 0.1465324271 - - Boron transporter, putative [Ricinus communis]
16 Hb_001913_030 0.1486598328 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_005074_010 0.1487417351 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
18 Hb_044624_010 0.1507021359 - - -
19 Hb_002097_210 0.1512648951 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007103_020 0.1542667417 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]

Gene co-expression network

sample Hb_000041_160 Hb_000041_160 Hb_123078_010 Hb_123078_010 Hb_000041_160--Hb_123078_010 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_105814_020 Hb_105814_020 Hb_000041_160--Hb_105814_020 Hb_027474_010 Hb_027474_010 Hb_000041_160--Hb_027474_010 Hb_004730_010 Hb_004730_010 Hb_000041_160--Hb_004730_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100 Hb_123078_010--Hb_105814_020 Hb_123078_010--Hb_027474_010 Hb_002267_030 Hb_002267_030 Hb_123078_010--Hb_002267_030 Hb_011101_010 Hb_011101_010 Hb_123078_010--Hb_011101_010 Hb_004218_290 Hb_004218_290 Hb_123078_010--Hb_004218_290 Hb_002335_010--Hb_000956_100 Hb_027892_050 Hb_027892_050 Hb_002335_010--Hb_027892_050 Hb_001269_530 Hb_001269_530 Hb_002335_010--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_002335_010--Hb_005074_010 Hb_001913_030 Hb_001913_030 Hb_002335_010--Hb_001913_030 Hb_105814_020--Hb_004730_010 Hb_105814_020--Hb_027474_010 Hb_105814_020--Hb_002267_030 Hb_009403_010 Hb_009403_010 Hb_105814_020--Hb_009403_010 Hb_002097_210 Hb_002097_210 Hb_027474_010--Hb_002097_210 Hb_001989_080 Hb_001989_080 Hb_027474_010--Hb_001989_080 Hb_001046_040 Hb_001046_040 Hb_027474_010--Hb_001046_040 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_004730_010--Hb_123078_010 Hb_004730_010--Hb_027474_010 Hb_000956_100--Hb_027892_050 Hb_007103_020 Hb_007103_020 Hb_000956_100--Hb_007103_020 Hb_030949_010 Hb_030949_010 Hb_000956_100--Hb_030949_010 Hb_000834_100 Hb_000834_100 Hb_000956_100--Hb_000834_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113846 0.0124741 0.0809933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0120179 0.0623171

CAGE analysis