Hb_004218_290

Information

Type transcription factor
Description TF Family: SRS
Location Contig4218: 279452-281513
Sequence    

Annotation

kegg
ID rcu:RCOM_1452410
description transcription factor, putative
nr
ID XP_012068665.1
description PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
swissprot
ID Q94CK9
description Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1
trembl
ID A0A067L8V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24533 PE=4 SV=1
Gene Ontology
ID GO:0007275
description protein lateral root primordium 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41714: 279565-279794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_290 0.0 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
2 Hb_011101_010 0.1081580217 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
3 Hb_123078_010 0.1096614193 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
4 Hb_000742_260 0.1120206989 - - hypothetical protein RCOM_1336320 [Ricinus communis]
5 Hb_000365_190 0.1193717658 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
6 Hb_013691_060 0.1277769443 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
7 Hb_002267_030 0.1384165448 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
8 Hb_001269_530 0.1448544615 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_105814_020 0.1452518587 - - berberine bridge enzyme [Hevea brasiliensis]
10 Hb_000041_160 0.1464968715 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
11 Hb_009787_020 0.146570982 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
12 Hb_001295_050 0.1465796559 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
13 Hb_000638_180 0.1473961988 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
14 Hb_010267_030 0.1525312289 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_000732_100 0.1535265547 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
16 Hb_009476_160 0.15421913 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
17 Hb_001318_230 0.1545186468 - - Boron transporter, putative [Ricinus communis]
18 Hb_004586_230 0.1565608856 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004143_050 0.156779861 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
20 Hb_001907_050 0.1570751213 - - Receptor like protein 6, putative [Theobroma cacao]

Gene co-expression network

sample Hb_004218_290 Hb_004218_290 Hb_011101_010 Hb_011101_010 Hb_004218_290--Hb_011101_010 Hb_123078_010 Hb_123078_010 Hb_004218_290--Hb_123078_010 Hb_000742_260 Hb_000742_260 Hb_004218_290--Hb_000742_260 Hb_000365_190 Hb_000365_190 Hb_004218_290--Hb_000365_190 Hb_013691_060 Hb_013691_060 Hb_004218_290--Hb_013691_060 Hb_002267_030 Hb_002267_030 Hb_004218_290--Hb_002267_030 Hb_011101_010--Hb_000365_190 Hb_011101_010--Hb_123078_010 Hb_001587_220 Hb_001587_220 Hb_011101_010--Hb_001587_220 Hb_011101_010--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_011101_010--Hb_000252_190 Hb_000041_160 Hb_000041_160 Hb_123078_010--Hb_000041_160 Hb_105814_020 Hb_105814_020 Hb_123078_010--Hb_105814_020 Hb_027474_010 Hb_027474_010 Hb_123078_010--Hb_027474_010 Hb_123078_010--Hb_002267_030 Hb_000742_260--Hb_013691_060 Hb_000742_260--Hb_000365_190 Hb_004143_050 Hb_004143_050 Hb_000742_260--Hb_004143_050 Hb_113396_010 Hb_113396_010 Hb_000742_260--Hb_113396_010 Hb_000742_260--Hb_011101_010 Hb_000365_190--Hb_113396_010 Hb_026048_030 Hb_026048_030 Hb_000365_190--Hb_026048_030 Hb_001310_080 Hb_001310_080 Hb_000365_190--Hb_001310_080 Hb_004586_230 Hb_004586_230 Hb_000365_190--Hb_004586_230 Hb_005694_150 Hb_005694_150 Hb_013691_060--Hb_005694_150 Hb_013691_060--Hb_000365_190 Hb_000325_070 Hb_000325_070 Hb_013691_060--Hb_000325_070 Hb_013691_060--Hb_113396_010 Hb_000375_150 Hb_000375_150 Hb_013691_060--Hb_000375_150 Hb_005714_140 Hb_005714_140 Hb_002267_030--Hb_005714_140 Hb_000260_130 Hb_000260_130 Hb_002267_030--Hb_000260_130 Hb_008550_030 Hb_008550_030 Hb_002267_030--Hb_008550_030 Hb_002267_030--Hb_105814_020 Hb_002820_090 Hb_002820_090 Hb_002267_030--Hb_002820_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0226547 3.21712 0.366218 2.4076 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.075042 0.246362 0.83395

CAGE analysis