Hb_005694_150

Information

Type -
Description -
Location Contig5694: 113688-115145
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09780g
description POPTRDRAFT_572434; AAA-type ATPase family protein
nr
ID XP_012083138.1
description PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9I917
description AAA-type ATPase family protein OS=Populus trichocarpa GN=POPTR_0014s09780g PE=4 SV=1
Gene Ontology
ID GO:0005524
description aaa-type atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_150 0.0 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
2 Hb_050847_030 0.0633681997 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
3 Hb_000375_150 0.0941712123 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000325_070 0.0959544328 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000365_340 0.1050831492 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
6 Hb_013691_060 0.1063437431 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
7 Hb_000892_030 0.107029244 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_004724_300 0.113918471 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
9 Hb_000567_110 0.1154841673 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
10 Hb_002725_080 0.1169490681 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000024_020 0.1197040887 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
12 Hb_008948_110 0.1205178687 - - PREDICTED: peroxidase 25 [Jatropha curcas]
13 Hb_004112_050 0.1211486964 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_002849_110 0.1254165547 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
15 Hb_113396_010 0.1257838176 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000780_110 0.1311070074 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_010417_110 0.1317180178 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004945_050 0.1321559605 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
19 Hb_009557_080 0.1331030779 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
20 Hb_002218_080 0.1345722465 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_005694_150 Hb_005694_150 Hb_050847_030 Hb_050847_030 Hb_005694_150--Hb_050847_030 Hb_000375_150 Hb_000375_150 Hb_005694_150--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_005694_150--Hb_000325_070 Hb_000365_340 Hb_000365_340 Hb_005694_150--Hb_000365_340 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_000892_030 Hb_000892_030 Hb_005694_150--Hb_000892_030 Hb_050847_030--Hb_000375_150 Hb_050847_030--Hb_000325_070 Hb_050847_030--Hb_000892_030 Hb_050847_030--Hb_000365_340 Hb_002004_010 Hb_002004_010 Hb_050847_030--Hb_002004_010 Hb_000329_170 Hb_000329_170 Hb_000375_150--Hb_000329_170 Hb_000375_150--Hb_000325_070 Hb_002725_080 Hb_002725_080 Hb_000375_150--Hb_002725_080 Hb_000181_390 Hb_000181_390 Hb_000375_150--Hb_000181_390 Hb_026415_010 Hb_026415_010 Hb_000325_070--Hb_026415_010 Hb_004879_030 Hb_004879_030 Hb_000325_070--Hb_004879_030 Hb_004724_300 Hb_004724_300 Hb_000325_070--Hb_004724_300 Hb_000015_230 Hb_000015_230 Hb_000325_070--Hb_000015_230 Hb_000365_340--Hb_000892_030 Hb_000567_110 Hb_000567_110 Hb_000365_340--Hb_000567_110 Hb_012799_040 Hb_012799_040 Hb_000365_340--Hb_012799_040 Hb_004218_080 Hb_004218_080 Hb_000365_340--Hb_004218_080 Hb_000742_260 Hb_000742_260 Hb_013691_060--Hb_000742_260 Hb_000365_190 Hb_000365_190 Hb_013691_060--Hb_000365_190 Hb_013691_060--Hb_000325_070 Hb_113396_010 Hb_113396_010 Hb_013691_060--Hb_113396_010 Hb_013691_060--Hb_000375_150 Hb_000047_010 Hb_000047_010 Hb_000892_030--Hb_000047_010 Hb_094437_050 Hb_094437_050 Hb_000892_030--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_000892_030--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_000892_030--Hb_002400_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409585 31.6078 11.3949 17.4151 0.603015 0.448507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0968077 0.203093 0.142931 0.96305 9.81352

CAGE analysis