Hb_004879_030

Information

Type -
Description -
Location Contig4879: 75441-76514
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04191g
description POPTRDRAFT_562471; hypothetical protein
nr
ID XP_011023091.1
description PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HES4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04191g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45081: 76022-76261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004879_030 0.0 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
2 Hb_026415_010 0.0777942055 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_152414_010 0.0810786487 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
4 Hb_115114_010 0.0915503737 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000325_070 0.0999015979 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_009557_080 0.101466391 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
7 Hb_006358_030 0.1095777321 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_132259_010 0.1131032529 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
9 Hb_004724_300 0.1226823295 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_009403_010 0.1233234246 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_000813_090 0.1297828053 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
12 Hb_036492_020 0.1305047231 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_134022_010 0.1306589939 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_001821_050 0.1311552039 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
15 Hb_000015_230 0.1322923547 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
16 Hb_000375_150 0.1341654628 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003929_040 0.1350920586 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
18 Hb_003073_040 0.1354308822 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
19 Hb_002725_080 0.1361354394 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_010417_110 0.1362315033 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004879_030 Hb_004879_030 Hb_026415_010 Hb_026415_010 Hb_004879_030--Hb_026415_010 Hb_152414_010 Hb_152414_010 Hb_004879_030--Hb_152414_010 Hb_115114_010 Hb_115114_010 Hb_004879_030--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_004879_030--Hb_000325_070 Hb_009557_080 Hb_009557_080 Hb_004879_030--Hb_009557_080 Hb_006358_030 Hb_006358_030 Hb_004879_030--Hb_006358_030 Hb_026415_010--Hb_000325_070 Hb_009403_010 Hb_009403_010 Hb_026415_010--Hb_009403_010 Hb_000813_090 Hb_000813_090 Hb_026415_010--Hb_000813_090 Hb_026415_010--Hb_115114_010 Hb_026415_010--Hb_152414_010 Hb_152414_010--Hb_006358_030 Hb_152414_010--Hb_115114_010 Hb_036492_020 Hb_036492_020 Hb_152414_010--Hb_036492_020 Hb_003929_040 Hb_003929_040 Hb_152414_010--Hb_003929_040 Hb_132259_010 Hb_132259_010 Hb_115114_010--Hb_132259_010 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_000140_220 Hb_000140_220 Hb_115114_010--Hb_000140_220 Hb_115114_010--Hb_000813_090 Hb_005694_150 Hb_005694_150 Hb_000325_070--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_000325_070--Hb_000375_150 Hb_004724_300 Hb_004724_300 Hb_000325_070--Hb_004724_300 Hb_000015_230 Hb_000015_230 Hb_000325_070--Hb_000015_230 Hb_002725_080 Hb_002725_080 Hb_009557_080--Hb_002725_080 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_009557_080--Hb_000140_220 Hb_006358_030--Hb_036492_020 Hb_000032_590 Hb_000032_590 Hb_006358_030--Hb_000032_590 Hb_002030_100 Hb_002030_100 Hb_006358_030--Hb_002030_100 Hb_005772_020 Hb_005772_020 Hb_006358_030--Hb_005772_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13179 73.736 26.8265 33.8735 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463998 0.0364956 0 0.337007 37.8882

CAGE analysis