Hb_000813_090

Information

Type -
Description -
Location Contig813: 75456-76880
Sequence    

Annotation

kegg
ID crb:CARUB_v10019318mg
description hypothetical protein
nr
ID XP_006293039.1
description hypothetical protein CARUB_v10019318mg [Capsella rubella]
swissprot
ID -
description -
trembl
ID A0A0E0RHA4
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_090 0.0 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
2 Hb_001046_040 0.0862483797 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_115114_010 0.0964729523 - - conserved hypothetical protein [Ricinus communis]
4 Hb_044624_010 0.0992226151 - - -
5 Hb_026415_010 0.1021149453 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
6 Hb_009557_080 0.1021818464 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
7 Hb_000041_160 0.1074520728 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
8 Hb_002335_010 0.1148917844 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
9 Hb_000015_230 0.1154828391 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
10 Hb_005074_010 0.1161855908 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
11 Hb_002250_140 0.1173850935 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
12 Hb_000325_070 0.1209736507 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_004730_010 0.1236542622 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
14 Hb_132259_010 0.1249900078 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
15 Hb_026050_010 0.1260299085 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_004324_220 0.1286415825 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
17 Hb_004879_030 0.1297828053 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
18 Hb_009403_010 0.1305736546 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_007103_020 0.1308590291 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
20 Hb_027474_010 0.1324028177 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]

Gene co-expression network

sample Hb_000813_090 Hb_000813_090 Hb_001046_040 Hb_001046_040 Hb_000813_090--Hb_001046_040 Hb_115114_010 Hb_115114_010 Hb_000813_090--Hb_115114_010 Hb_044624_010 Hb_044624_010 Hb_000813_090--Hb_044624_010 Hb_026415_010 Hb_026415_010 Hb_000813_090--Hb_026415_010 Hb_009557_080 Hb_009557_080 Hb_000813_090--Hb_009557_080 Hb_000041_160 Hb_000041_160 Hb_000813_090--Hb_000041_160 Hb_001046_040--Hb_044624_010 Hb_001046_040--Hb_115114_010 Hb_004324_220 Hb_004324_220 Hb_001046_040--Hb_004324_220 Hb_175670_010 Hb_175670_010 Hb_001046_040--Hb_175670_010 Hb_004143_140 Hb_004143_140 Hb_001046_040--Hb_004143_140 Hb_132259_010 Hb_132259_010 Hb_115114_010--Hb_132259_010 Hb_004879_030 Hb_004879_030 Hb_115114_010--Hb_004879_030 Hb_115114_010--Hb_044624_010 Hb_000140_220 Hb_000140_220 Hb_115114_010--Hb_000140_220 Hb_044624_010--Hb_004324_220 Hb_022487_010 Hb_022487_010 Hb_044624_010--Hb_022487_010 Hb_044624_010--Hb_175670_010 Hb_000325_070 Hb_000325_070 Hb_026415_010--Hb_000325_070 Hb_026415_010--Hb_004879_030 Hb_009403_010 Hb_009403_010 Hb_026415_010--Hb_009403_010 Hb_026415_010--Hb_115114_010 Hb_152414_010 Hb_152414_010 Hb_026415_010--Hb_152414_010 Hb_002725_080 Hb_002725_080 Hb_009557_080--Hb_002725_080 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_009557_080--Hb_004879_030 Hb_009557_080--Hb_000140_220 Hb_123078_010 Hb_123078_010 Hb_000041_160--Hb_123078_010 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_105814_020 Hb_105814_020 Hb_000041_160--Hb_105814_020 Hb_027474_010 Hb_027474_010 Hb_000041_160--Hb_027474_010 Hb_004730_010 Hb_004730_010 Hb_000041_160--Hb_004730_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.69391 0.439016 1.15708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0951479 1.11076

CAGE analysis