Hb_000956_100

Information

Type -
Description -
Location Contig956: 116172-118472
Sequence    

Annotation

kegg
ID rcu:RCOM_1589820
description Cucumisin precursor, putative (EC:1.3.1.74)
nr
ID XP_002510195.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID O49607
description Subtilisin-like protease SBT1.6 OS=Arabidopsis thaliana GN=SBT1.6 PE=2 SV=1
trembl
ID B9R7A2
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1589820 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63555: 116906-117425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_100 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_027892_050 0.048823025 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
3 Hb_002335_010 0.0618804414 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
4 Hb_000041_160 0.1062538362 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
5 Hb_007103_020 0.1162985413 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
6 Hb_030949_010 0.1211295397 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
7 Hb_000834_100 0.1257258285 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
8 Hb_001305_020 0.1280120995 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
9 Hb_005074_010 0.130439782 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
10 Hb_000245_100 0.1312329731 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
11 Hb_001269_530 0.1331841778 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_002250_140 0.1339825231 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
13 Hb_001907_050 0.1368293602 - - Receptor like protein 6, putative [Theobroma cacao]
14 Hb_000270_750 0.1379908469 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
15 Hb_002598_020 0.1438509113 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
16 Hb_000813_090 0.1446480798 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
17 Hb_001913_030 0.1463743157 - - ankyrin repeat protein [Bruguiera gymnorhiza]
18 Hb_001318_230 0.1483330634 - - Boron transporter, putative [Ricinus communis]
19 Hb_005271_180 0.1501053989 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
20 Hb_003835_030 0.1514896282 - - glycosyltransferase, partial [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000956_100 Hb_000956_100 Hb_027892_050 Hb_027892_050 Hb_000956_100--Hb_027892_050 Hb_002335_010 Hb_002335_010 Hb_000956_100--Hb_002335_010 Hb_000041_160 Hb_000041_160 Hb_000956_100--Hb_000041_160 Hb_007103_020 Hb_007103_020 Hb_000956_100--Hb_007103_020 Hb_030949_010 Hb_030949_010 Hb_000956_100--Hb_030949_010 Hb_000834_100 Hb_000834_100 Hb_000956_100--Hb_000834_100 Hb_027892_050--Hb_002335_010 Hb_027892_050--Hb_007103_020 Hb_027892_050--Hb_030949_010 Hb_001305_020 Hb_001305_020 Hb_027892_050--Hb_001305_020 Hb_002250_140 Hb_002250_140 Hb_027892_050--Hb_002250_140 Hb_002335_010--Hb_000041_160 Hb_001269_530 Hb_001269_530 Hb_002335_010--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_002335_010--Hb_005074_010 Hb_001913_030 Hb_001913_030 Hb_002335_010--Hb_001913_030 Hb_123078_010 Hb_123078_010 Hb_000041_160--Hb_123078_010 Hb_105814_020 Hb_105814_020 Hb_000041_160--Hb_105814_020 Hb_027474_010 Hb_027474_010 Hb_000041_160--Hb_027474_010 Hb_004730_010 Hb_004730_010 Hb_000041_160--Hb_004730_010 Hb_000258_230 Hb_000258_230 Hb_007103_020--Hb_000258_230 Hb_009771_040 Hb_009771_040 Hb_007103_020--Hb_009771_040 Hb_152277_010 Hb_152277_010 Hb_007103_020--Hb_152277_010 Hb_007103_020--Hb_002250_140 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010 Hb_008948_010 Hb_008948_010 Hb_030949_010--Hb_008948_010 Hb_001907_050 Hb_001907_050 Hb_030949_010--Hb_001907_050 Hb_019925_020 Hb_019925_020 Hb_030949_010--Hb_019925_020 Hb_030949_010--Hb_007103_020 Hb_002902_070 Hb_002902_070 Hb_000834_100--Hb_002902_070 Hb_000834_100--Hb_001305_020 Hb_003858_060 Hb_003858_060 Hb_000834_100--Hb_003858_060 Hb_000427_040 Hb_000427_040 Hb_000834_100--Hb_000427_040 Hb_000069_540 Hb_000069_540 Hb_000834_100--Hb_000069_540 Hb_004204_220 Hb_004204_220 Hb_000834_100--Hb_004204_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00851718 11.6987 2.00565 12.1007 0.0164997 0.0155187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.68479 10.944

CAGE analysis