Hb_000140_220

Information

Type transcription factor
Description TF Family: WRKY
Location Contig140: 218460-219772
Sequence    

Annotation

kegg
ID rcu:RCOM_1616660
description WRKY transcription factor, putative
nr
ID XP_012083306.1
description PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID S5CKC4
description Uncharacterized protein OS=Jatropha curcas GN=WRKY47 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_220 0.0 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
2 Hb_003579_010 0.090660804 - - cryptochrome 1.2 [Populus tremula]
3 Hb_115114_010 0.0949211856 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003073_040 0.0955120496 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
5 Hb_009557_080 0.1017526174 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
6 Hb_000049_290 0.1037560527 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_004324_220 0.1091224566 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
8 Hb_001269_240 0.1108486084 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
9 Hb_132259_010 0.1139663171 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
10 Hb_022487_010 0.1160288701 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_000015_230 0.1215910471 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
12 Hb_044624_010 0.1220517574 - - -
13 Hb_000270_250 0.128762287 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
14 Hb_170401_010 0.1320091654 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_000574_230 0.1339140422 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
16 Hb_000813_090 0.1348979208 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
17 Hb_001046_040 0.1358084463 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_004879_030 0.1381630819 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
19 Hb_006358_030 0.138272412 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_007257_070 0.1386514743 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_220 Hb_000140_220 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_115114_010 Hb_115114_010 Hb_000140_220--Hb_115114_010 Hb_003073_040 Hb_003073_040 Hb_000140_220--Hb_003073_040 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000049_290 Hb_000049_290 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220 Hb_003579_010--Hb_003073_040 Hb_132259_010 Hb_132259_010 Hb_003579_010--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003579_010--Hb_000015_230 Hb_003579_010--Hb_115114_010 Hb_003579_010--Hb_000049_290 Hb_115114_010--Hb_132259_010 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_004879_030 Hb_004879_030 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_000813_090 Hb_000813_090 Hb_115114_010--Hb_000813_090 Hb_003073_040--Hb_132259_010 Hb_003073_040--Hb_000015_230 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_002725_080 Hb_002725_080 Hb_009557_080--Hb_002725_080 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_009557_080--Hb_004879_030 Hb_022487_010 Hb_022487_010 Hb_000049_290--Hb_022487_010 Hb_000049_290--Hb_004324_220 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220 Hb_004324_220--Hb_044624_010 Hb_004324_220--Hb_022487_010 Hb_175670_010 Hb_175670_010 Hb_004324_220--Hb_175670_010 Hb_004324_220--Hb_001046_040 Hb_000313_100 Hb_000313_100 Hb_004324_220--Hb_000313_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0788693 3.7024 2.02524 2.25339 0.0197196 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.243476 3.34151

CAGE analysis