Hb_000015_230

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig15: 212232-213406
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05520g
description POPTRDRAFT_563897; hypothetical protein
nr
ID XP_011028625.1
description PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
swissprot
ID Q9M2U1
description Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2
trembl
ID A5BZE7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020749 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_230 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
2 Hb_132259_010 0.0884489669 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
3 Hb_115114_010 0.1041364237 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000325_070 0.1048461211 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_003073_040 0.1141324976 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
6 Hb_000813_090 0.1154828391 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
7 Hb_000140_220 0.1215910471 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
8 Hb_009557_080 0.1252434352 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
9 Hb_004730_010 0.1297370302 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
10 Hb_003579_010 0.1304427706 - - cryptochrome 1.2 [Populus tremula]
11 Hb_004879_030 0.1322923547 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
12 Hb_001046_040 0.1331768483 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_026415_010 0.1362605312 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_044624_010 0.1376810621 - - -
15 Hb_005271_180 0.1424806475 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
16 Hb_050847_030 0.1438381882 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
17 Hb_000375_150 0.1451434869 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009403_010 0.1531822155 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_005694_150 0.1545804365 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_004724_300 0.1557393547 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]

Gene co-expression network

sample Hb_000015_230 Hb_000015_230 Hb_132259_010 Hb_132259_010 Hb_000015_230--Hb_132259_010 Hb_115114_010 Hb_115114_010 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_003073_040 Hb_003073_040 Hb_000015_230--Hb_003073_040 Hb_000813_090 Hb_000813_090 Hb_000015_230--Hb_000813_090 Hb_000140_220 Hb_000140_220 Hb_000015_230--Hb_000140_220 Hb_132259_010--Hb_115114_010 Hb_132259_010--Hb_003073_040 Hb_004879_030 Hb_004879_030 Hb_132259_010--Hb_004879_030 Hb_132259_010--Hb_000140_220 Hb_000032_590 Hb_000032_590 Hb_132259_010--Hb_000032_590 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_115114_010--Hb_000140_220 Hb_115114_010--Hb_000813_090 Hb_026415_010 Hb_026415_010 Hb_000325_070--Hb_026415_010 Hb_005694_150 Hb_005694_150 Hb_000325_070--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_000325_070--Hb_000375_150 Hb_000325_070--Hb_004879_030 Hb_004724_300 Hb_004724_300 Hb_000325_070--Hb_004724_300 Hb_003073_040--Hb_000140_220 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_000813_090--Hb_001046_040 Hb_000813_090--Hb_044624_010 Hb_000813_090--Hb_026415_010 Hb_009557_080 Hb_009557_080 Hb_000813_090--Hb_009557_080 Hb_000041_160 Hb_000041_160 Hb_000813_090--Hb_000041_160 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_000140_220--Hb_009557_080 Hb_000049_290 Hb_000049_290 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102766 10.3527 3.01399 5.59343 0.152792 0.288106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.347618 7.13996

CAGE analysis