Hb_002030_100

Information

Type -
Description -
Location Contig2030: 131295-132799
Sequence    

Annotation

kegg
ID tcc:TCM_001021
description ENTH/ANTH/VHS superfamily protein, putative
nr
ID XP_012081633.1
description PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
swissprot
ID Q8L936
description Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2
trembl
ID A0A067KD53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18674 PE=4 SV=1
Gene Ontology
ID GO:0005543
description clathrin assembly protein at4g40080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20826: 131393-132651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_100 0.0 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
2 Hb_006358_030 0.0922467676 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
3 Hb_004109_150 0.0994324246 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
4 Hb_036492_020 0.1116019006 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_000032_590 0.1219318636 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
6 Hb_000656_260 0.1229638337 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
7 Hb_003073_040 0.1244010928 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
8 Hb_000402_180 0.1273138851 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
9 Hb_000156_080 0.1291759814 - - Potassium channel KAT2, putative [Ricinus communis]
10 Hb_010180_050 0.1312976157 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
11 Hb_012814_030 0.1397632674 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
12 Hb_003929_040 0.1406502853 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_152414_010 0.1431001946 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
14 Hb_005772_020 0.1451803019 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_012799_040 0.1462291777 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
16 Hb_005054_320 0.1479884443 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
17 Hb_004879_030 0.1488816875 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
18 Hb_132259_010 0.1568735553 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
19 Hb_115114_010 0.1570169685 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010175_050 0.1617912862 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_100 Hb_002030_100 Hb_006358_030 Hb_006358_030 Hb_002030_100--Hb_006358_030 Hb_004109_150 Hb_004109_150 Hb_002030_100--Hb_004109_150 Hb_036492_020 Hb_036492_020 Hb_002030_100--Hb_036492_020 Hb_000032_590 Hb_000032_590 Hb_002030_100--Hb_000032_590 Hb_000656_260 Hb_000656_260 Hb_002030_100--Hb_000656_260 Hb_003073_040 Hb_003073_040 Hb_002030_100--Hb_003073_040 Hb_006358_030--Hb_036492_020 Hb_006358_030--Hb_000032_590 Hb_152414_010 Hb_152414_010 Hb_006358_030--Hb_152414_010 Hb_005772_020 Hb_005772_020 Hb_006358_030--Hb_005772_020 Hb_004879_030 Hb_004879_030 Hb_006358_030--Hb_004879_030 Hb_000156_080 Hb_000156_080 Hb_004109_150--Hb_000156_080 Hb_002783_130 Hb_002783_130 Hb_004109_150--Hb_002783_130 Hb_004109_150--Hb_006358_030 Hb_004109_150--Hb_000656_260 Hb_004109_150--Hb_036492_020 Hb_000402_180 Hb_000402_180 Hb_036492_020--Hb_000402_180 Hb_036492_020--Hb_000656_260 Hb_134022_010 Hb_134022_010 Hb_036492_020--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_036492_020--Hb_003929_040 Hb_036492_020--Hb_152414_010 Hb_171900_110 Hb_171900_110 Hb_000032_590--Hb_171900_110 Hb_005240_010 Hb_005240_010 Hb_000032_590--Hb_005240_010 Hb_000032_590--Hb_005772_020 Hb_115114_010 Hb_115114_010 Hb_000032_590--Hb_115114_010 Hb_132259_010 Hb_132259_010 Hb_000032_590--Hb_132259_010 Hb_012799_040 Hb_012799_040 Hb_000656_260--Hb_012799_040 Hb_029584_110 Hb_029584_110 Hb_000656_260--Hb_029584_110 Hb_000656_260--Hb_006358_030 Hb_000656_260--Hb_000402_180 Hb_002999_130 Hb_002999_130 Hb_000656_260--Hb_002999_130 Hb_000140_220 Hb_000140_220 Hb_003073_040--Hb_000140_220 Hb_003073_040--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003073_040--Hb_000015_230 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0352233 28.2798 18.4416 9.48873 0.134329 0.991671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357887 0 0 0.191379 18.6898

CAGE analysis