Hb_000270_250

Information

Type transcription factor
Description TF Family: MYB
Location Contig270: 217840-219396
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07900g
description POPTRDRAFT_575069; hypothetical protein
nr
ID XP_002321544.1
description hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
swissprot
ID P20025
description Myb-related protein Zm38 OS=Zea mays PE=2 SV=1
trembl
ID B9IEI5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s07900g PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_250 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
2 Hb_000427_040 0.112958395 - - Gibberellin receptor GID1, putative [Ricinus communis]
3 Hb_032779_010 0.1189382383 - - unnamed protein product [Vitis vinifera]
4 Hb_003073_040 0.1196488754 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
5 Hb_000500_230 0.1196610557 - - hypothetical protein RCOM_0634810 [Ricinus communis]
6 Hb_004880_050 0.1214316518 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001147_030 0.1248095817 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
8 Hb_000140_220 0.128762287 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
9 Hb_007257_070 0.1295036325 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
10 Hb_000167_100 0.1303183571 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_031862_120 0.1305884844 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
12 Hb_017491_010 0.1312413226 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
13 Hb_022487_010 0.1314448733 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_000260_480 0.1317993966 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
15 Hb_014700_030 0.1323978654 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_001269_240 0.1327764398 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
17 Hb_000010_370 0.1340993098 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
18 Hb_003071_050 0.1341492252 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
19 Hb_004324_220 0.1366497756 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
20 Hb_000260_410 0.1379691679 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_250 Hb_000270_250 Hb_000427_040 Hb_000427_040 Hb_000270_250--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_000270_250--Hb_032779_010 Hb_003073_040 Hb_003073_040 Hb_000270_250--Hb_003073_040 Hb_000500_230 Hb_000500_230 Hb_000270_250--Hb_000500_230 Hb_004880_050 Hb_004880_050 Hb_000270_250--Hb_004880_050 Hb_001147_030 Hb_001147_030 Hb_000270_250--Hb_001147_030 Hb_000427_040--Hb_032779_010 Hb_005051_010 Hb_005051_010 Hb_000427_040--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_000427_040--Hb_002902_070 Hb_014700_030 Hb_014700_030 Hb_000427_040--Hb_014700_030 Hb_001305_020 Hb_001305_020 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_032779_010--Hb_014700_030 Hb_032779_010--Hb_004880_050 Hb_001789_120 Hb_001789_120 Hb_032779_010--Hb_001789_120 Hb_032779_010--Hb_005051_010 Hb_032779_010--Hb_002902_070 Hb_000140_220 Hb_000140_220 Hb_003073_040--Hb_000140_220 Hb_132259_010 Hb_132259_010 Hb_003073_040--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003073_040--Hb_000015_230 Hb_115114_010 Hb_115114_010 Hb_003073_040--Hb_115114_010 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_006970_170 Hb_006970_170 Hb_000500_230--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_000500_230--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_000500_230--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_004880_050--Hb_001789_120 Hb_004880_050--Hb_014700_030 Hb_000818_090 Hb_000818_090 Hb_004880_050--Hb_000818_090 Hb_013394_120 Hb_013394_120 Hb_004880_050--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_004880_050--Hb_010222_060 Hb_170401_010 Hb_170401_010 Hb_001147_030--Hb_170401_010 Hb_001147_030--Hb_000500_230 Hb_004907_070 Hb_004907_070 Hb_001147_030--Hb_004907_070 Hb_002010_080 Hb_002010_080 Hb_001147_030--Hb_002010_080 Hb_001147_030--Hb_000010_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.304248 0.252627 0.24897 0 0.0170901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.042055 0.359981

CAGE analysis