Hb_170401_010

Information

Type -
Description -
Location Contig170401: 969-4740
Sequence    

Annotation

kegg
ID rcu:RCOM_1310790
description receptor serine/threonine kinase, putative
nr
ID XP_002527020.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID Q9FID5
description Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1
trembl
ID B9SM01
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1310790 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170401_010 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_001147_030 0.0859226556 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
3 Hb_000500_230 0.1097178636 - - hypothetical protein RCOM_0634810 [Ricinus communis]
4 Hb_000010_370 0.112727484 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
5 Hb_000260_480 0.1142383702 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
6 Hb_000140_220 0.1320091654 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
7 Hb_000049_290 0.1320483981 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
8 Hb_183025_010 0.1328511474 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
9 Hb_017491_010 0.1336339541 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
10 Hb_007894_120 0.1369234273 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
11 Hb_032779_010 0.1395877101 - - unnamed protein product [Vitis vinifera]
12 Hb_000025_590 0.140151864 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
13 Hb_006970_170 0.1404743061 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000260_410 0.144533051 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
15 Hb_000270_250 0.1449787744 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
16 Hb_000320_450 0.1454538945 - - secretory peroxidase [Hevea brasiliensis]
17 Hb_002871_110 0.1468072398 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
18 Hb_004880_050 0.1472340287 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005643_040 0.1494093983 - - zinc finger protein, putative [Ricinus communis]
20 Hb_064293_010 0.1496241843 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_170401_010 Hb_170401_010 Hb_001147_030 Hb_001147_030 Hb_170401_010--Hb_001147_030 Hb_000500_230 Hb_000500_230 Hb_170401_010--Hb_000500_230 Hb_000010_370 Hb_000010_370 Hb_170401_010--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_170401_010--Hb_000260_480 Hb_000140_220 Hb_000140_220 Hb_170401_010--Hb_000140_220 Hb_000049_290 Hb_000049_290 Hb_170401_010--Hb_000049_290 Hb_001147_030--Hb_000500_230 Hb_000270_250 Hb_000270_250 Hb_001147_030--Hb_000270_250 Hb_004907_070 Hb_004907_070 Hb_001147_030--Hb_004907_070 Hb_002010_080 Hb_002010_080 Hb_001147_030--Hb_002010_080 Hb_001147_030--Hb_000010_370 Hb_006970_170 Hb_006970_170 Hb_000500_230--Hb_006970_170 Hb_000500_230--Hb_000010_370 Hb_000500_230--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_000025_590 Hb_000025_590 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_002871_110 Hb_000010_370--Hb_006970_170 Hb_000010_370--Hb_000260_480 Hb_000010_370--Hb_007894_120 Hb_000260_480--Hb_006970_170 Hb_000260_480--Hb_007894_120 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000260_480--Hb_000025_590 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_115114_010 Hb_115114_010 Hb_000140_220--Hb_115114_010 Hb_003073_040 Hb_003073_040 Hb_000140_220--Hb_003073_040 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220 Hb_022487_010 Hb_022487_010 Hb_000049_290--Hb_022487_010 Hb_000049_290--Hb_004324_220 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0392435 0.474556 0.465721 0.336816 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112195 0.54023

CAGE analysis