Hb_022487_010

Information

Type -
Description -
Location Contig22487: 99-674
Sequence    

Annotation

kegg
ID fve:101292850
description disease resistance protein RPM1-like
nr
ID XP_012077051.1
description PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067LB31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022487_010 0.0 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
2 Hb_004324_220 0.0537449597 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
3 Hb_044624_010 0.0797822677 - - -
4 Hb_000049_290 0.0879644247 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
5 Hb_000427_040 0.1042150195 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_032779_010 0.1141933893 - - unnamed protein product [Vitis vinifera]
7 Hb_000140_220 0.1160288701 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
8 Hb_000363_050 0.1240872419 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
9 Hb_064293_010 0.1253475899 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_000331_220 0.1276361446 - - conserved hypothetical protein [Ricinus communis]
11 Hb_115114_010 0.1278677722 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000270_250 0.1314448733 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
13 Hb_001046_040 0.1327721737 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000780_160 0.1328485876 - - hypothetical protein RCOM_0483300 [Ricinus communis]
15 Hb_175670_010 0.1329102653 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_000369_040 0.1329519771 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_002818_070 0.1335992112 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000112_040 0.1354909794 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_005051_010 0.1377492403 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_014700_030 0.139827971 - - tryptophan synthase beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_022487_010 Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_022487_010--Hb_004324_220 Hb_044624_010 Hb_044624_010 Hb_022487_010--Hb_044624_010 Hb_000049_290 Hb_000049_290 Hb_022487_010--Hb_000049_290 Hb_000427_040 Hb_000427_040 Hb_022487_010--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_022487_010--Hb_032779_010 Hb_000140_220 Hb_000140_220 Hb_022487_010--Hb_000140_220 Hb_004324_220--Hb_044624_010 Hb_175670_010 Hb_175670_010 Hb_004324_220--Hb_175670_010 Hb_001046_040 Hb_001046_040 Hb_004324_220--Hb_001046_040 Hb_004324_220--Hb_000049_290 Hb_000313_100 Hb_000313_100 Hb_004324_220--Hb_000313_100 Hb_044624_010--Hb_001046_040 Hb_044624_010--Hb_175670_010 Hb_115114_010 Hb_115114_010 Hb_044624_010--Hb_115114_010 Hb_000813_090 Hb_000813_090 Hb_044624_010--Hb_000813_090 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_000049_290--Hb_000140_220 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220 Hb_000427_040--Hb_032779_010 Hb_005051_010 Hb_005051_010 Hb_000427_040--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_000427_040--Hb_002902_070 Hb_014700_030 Hb_014700_030 Hb_000427_040--Hb_014700_030 Hb_001305_020 Hb_001305_020 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_032779_010--Hb_014700_030 Hb_004880_050 Hb_004880_050 Hb_032779_010--Hb_004880_050 Hb_001789_120 Hb_001789_120 Hb_032779_010--Hb_001789_120 Hb_032779_010--Hb_005051_010 Hb_032779_010--Hb_002902_070 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_000140_220--Hb_115114_010 Hb_003073_040 Hb_003073_040 Hb_000140_220--Hb_003073_040 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000140_220--Hb_004324_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.27452 1.07699 1.30682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.381576 2.75695

CAGE analysis