Hb_175670_010

Information

Type -
Description -
Location Contig175670: 240-1058
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0016491
description lrr receptor-like serine threonine-protein kinase gso1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175670_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_000313_100 0.0354549523 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
3 Hb_005569_030 0.0774857874 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
4 Hb_004324_220 0.0839886147 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
5 Hb_003562_040 0.0884820609 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
6 Hb_044624_010 0.0908784217 - - -
7 Hb_001046_040 0.0921927538 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_004143_140 0.0924854851 - - glycosyltransferase, partial [Arabidopsis thaliana]
9 Hb_007007_090 0.1025735968 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_001821_050 0.1072080757 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
11 Hb_033153_040 0.1088486982 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_002375_080 0.1127533933 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002890_320 0.1172827503 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
14 Hb_004837_110 0.1193015494 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
15 Hb_033312_090 0.1240639341 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
16 Hb_005074_010 0.1245743697 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
17 Hb_007102_010 0.1285500899 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
18 Hb_001989_080 0.1302402219 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_027474_010 0.1312274968 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
20 Hb_000049_290 0.1324558742 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_175670_010 Hb_175670_010 Hb_000313_100 Hb_000313_100 Hb_175670_010--Hb_000313_100 Hb_005569_030 Hb_005569_030 Hb_175670_010--Hb_005569_030 Hb_004324_220 Hb_004324_220 Hb_175670_010--Hb_004324_220 Hb_003562_040 Hb_003562_040 Hb_175670_010--Hb_003562_040 Hb_044624_010 Hb_044624_010 Hb_175670_010--Hb_044624_010 Hb_001046_040 Hb_001046_040 Hb_175670_010--Hb_001046_040 Hb_000313_100--Hb_005569_030 Hb_033153_040 Hb_033153_040 Hb_000313_100--Hb_033153_040 Hb_000313_100--Hb_004324_220 Hb_002890_320 Hb_002890_320 Hb_000313_100--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_000313_100--Hb_001821_050 Hb_005569_030--Hb_033153_040 Hb_005569_030--Hb_002890_320 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_004324_220--Hb_044624_010 Hb_022487_010 Hb_022487_010 Hb_004324_220--Hb_022487_010 Hb_004324_220--Hb_001046_040 Hb_000049_290 Hb_000049_290 Hb_004324_220--Hb_000049_290 Hb_005034_010 Hb_005034_010 Hb_003562_040--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_003562_040--Hb_001174_030 Hb_005054_280 Hb_005054_280 Hb_003562_040--Hb_005054_280 Hb_005074_010 Hb_005074_010 Hb_003562_040--Hb_005074_010 Hb_007007_090 Hb_007007_090 Hb_003562_040--Hb_007007_090 Hb_044624_010--Hb_001046_040 Hb_044624_010--Hb_022487_010 Hb_115114_010 Hb_115114_010 Hb_044624_010--Hb_115114_010 Hb_000813_090 Hb_000813_090 Hb_044624_010--Hb_000813_090 Hb_001046_040--Hb_000813_090 Hb_001046_040--Hb_115114_010 Hb_004143_140 Hb_004143_140 Hb_001046_040--Hb_004143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.529757 0.178894 0.202153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.104031 0.310522

CAGE analysis