Hb_000049_290

Information

Type -
Description -
Location Contig49: 254456-257521
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25570g
description POPTRDRAFT_799505; C2 domain-containing family protein
nr
ID XP_012085187.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9GRA8
description C2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s25570g PE=4 SV=2
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45275: 256007-256357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_290 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
2 Hb_022487_010 0.0879644247 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
3 Hb_004324_220 0.0913479737 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
4 Hb_000363_050 0.1016936048 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
5 Hb_000140_220 0.1037560527 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
6 Hb_064293_010 0.1105592285 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000331_220 0.1189808987 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000112_040 0.1204431683 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_044624_010 0.121639996 - - -
10 Hb_000313_100 0.125413557 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
11 Hb_002211_020 0.1259010539 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
12 Hb_004907_070 0.1293835372 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_000260_480 0.1307846978 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
14 Hb_170401_010 0.1320483981 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_175670_010 0.1324558742 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_001836_010 0.1400365569 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_000500_230 0.1400625026 - - hypothetical protein RCOM_0634810 [Ricinus communis]
18 Hb_115114_010 0.1405516531 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002818_070 0.1431027771 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_003579_010 0.1432028548 - - cryptochrome 1.2 [Populus tremula]

Gene co-expression network

sample Hb_000049_290 Hb_000049_290 Hb_022487_010 Hb_022487_010 Hb_000049_290--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000049_290--Hb_004324_220 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_000140_220 Hb_000140_220 Hb_000049_290--Hb_000140_220 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220 Hb_022487_010--Hb_004324_220 Hb_044624_010 Hb_044624_010 Hb_022487_010--Hb_044624_010 Hb_000427_040 Hb_000427_040 Hb_022487_010--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_022487_010--Hb_032779_010 Hb_022487_010--Hb_000140_220 Hb_004324_220--Hb_044624_010 Hb_175670_010 Hb_175670_010 Hb_004324_220--Hb_175670_010 Hb_001046_040 Hb_001046_040 Hb_004324_220--Hb_001046_040 Hb_000313_100 Hb_000313_100 Hb_004324_220--Hb_000313_100 Hb_010055_020 Hb_010055_020 Hb_000363_050--Hb_010055_020 Hb_003517_090 Hb_003517_090 Hb_000363_050--Hb_003517_090 Hb_000363_050--Hb_022487_010 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_115114_010 Hb_115114_010 Hb_000140_220--Hb_115114_010 Hb_003073_040 Hb_003073_040 Hb_000140_220--Hb_003073_040 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000140_220--Hb_004324_220 Hb_033153_040 Hb_033153_040 Hb_064293_010--Hb_033153_040 Hb_002849_120 Hb_002849_120 Hb_064293_010--Hb_002849_120 Hb_004767_020 Hb_004767_020 Hb_064293_010--Hb_004767_020 Hb_064293_010--Hb_000331_220 Hb_000025_590 Hb_000025_590 Hb_064293_010--Hb_000025_590 Hb_000112_040 Hb_000112_040 Hb_000331_220--Hb_000112_040 Hb_071130_020 Hb_071130_020 Hb_000331_220--Hb_071130_020 Hb_002818_070 Hb_002818_070 Hb_000331_220--Hb_002818_070 Hb_001836_010 Hb_001836_010 Hb_000331_220--Hb_001836_010 Hb_004994_200 Hb_004994_200 Hb_000331_220--Hb_004994_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00773775 0.756936 0.422004 0.320492 0.011707 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123931 0.786117

CAGE analysis