Hb_002818_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2818: 82007-85030
Sequence    

Annotation

kegg
ID rcu:RCOM_1343180
description WRKY transcription factor, putative
nr
ID XP_002515176.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9ZSI7
description Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2
trembl
ID B9RN37
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1343180 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 47

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29497: 82552-83095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_070 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001836_010 0.0661723488 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
3 Hb_000009_390 0.0869531308 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
4 Hb_000331_220 0.0873887633 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003077_140 0.0955488464 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
6 Hb_071130_020 0.0985876109 - - -
7 Hb_000680_020 0.1089740408 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_003683_200 0.112098994 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_033153_040 0.1138735688 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_004994_200 0.1165496584 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
11 Hb_000767_010 0.1170252116 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
12 Hb_007035_010 0.117473278 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
13 Hb_064293_010 0.1181879311 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_001866_100 0.1192292684 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
15 Hb_002849_120 0.1285054389 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_004785_200 0.1298022511 - - PREDICTED: protein MKS1 [Jatropha curcas]
17 Hb_022487_010 0.1335992112 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_004007_230 0.1337177343 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
19 Hb_000025_590 0.1355835454 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
20 Hb_001514_150 0.1366945633 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_002818_070 Hb_002818_070 Hb_001836_010 Hb_001836_010 Hb_002818_070--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_002818_070--Hb_000009_390 Hb_000331_220 Hb_000331_220 Hb_002818_070--Hb_000331_220 Hb_003077_140 Hb_003077_140 Hb_002818_070--Hb_003077_140 Hb_071130_020 Hb_071130_020 Hb_002818_070--Hb_071130_020 Hb_000680_020 Hb_000680_020 Hb_002818_070--Hb_000680_020 Hb_001836_010--Hb_000009_390 Hb_007035_010 Hb_007035_010 Hb_001836_010--Hb_007035_010 Hb_001836_010--Hb_000331_220 Hb_003683_200 Hb_003683_200 Hb_001836_010--Hb_003683_200 Hb_006827_030 Hb_006827_030 Hb_001836_010--Hb_006827_030 Hb_001866_100 Hb_001866_100 Hb_000009_390--Hb_001866_100 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_000009_390--Hb_007035_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150 Hb_000112_040 Hb_000112_040 Hb_000331_220--Hb_000112_040 Hb_000331_220--Hb_071130_020 Hb_064293_010 Hb_064293_010 Hb_000331_220--Hb_064293_010 Hb_004994_200 Hb_004994_200 Hb_000331_220--Hb_004994_200 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_071130_020--Hb_000680_020 Hb_071130_020--Hb_001856_110 Hb_071130_020--Hb_000009_390 Hb_071130_020--Hb_003683_200 Hb_000680_020--Hb_003683_200 Hb_002849_120 Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_000680_020--Hb_033153_040 Hb_127661_010 Hb_127661_010 Hb_000680_020--Hb_127661_010 Hb_000680_020--Hb_003077_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.35446 2.07752 1.64246 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.95595 5.86018

CAGE analysis