Hb_002849_120

Information

Type -
Description -
Location Contig2849: 94722-105950
Sequence    

Annotation

kegg
ID rcu:RCOM_1616230
description ferric-chelate reductase, putative (EC:1.6.3.1)
nr
ID ADR70886.1
description ferric reductase oxidase [Manihot esculenta]
swissprot
ID P92949
description Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2
trembl
ID V9HYU6
description Ferric reductase oxidase OS=Manihot esculenta GN=FRO1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description ferric reduction oxidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29831: 102320-105920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_120 0.0 - - ferric reductase oxidase [Manihot esculenta]
2 Hb_033153_040 0.0692826327 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_001153_090 0.0752207693 - - PREDICTED: protein FAM63A [Jatropha curcas]
4 Hb_003849_030 0.0762409832 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
5 Hb_000680_020 0.0845025332 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001160_020 0.0857932634 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
7 Hb_127661_010 0.0965427638 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003387_080 0.0967846898 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_007747_100 0.1019119795 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
10 Hb_000025_590 0.1038655542 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
11 Hb_007113_020 0.1041269784 - - -
12 Hb_006269_010 0.106019606 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
13 Hb_003077_140 0.1062080264 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
14 Hb_064293_010 0.1064970892 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_003683_200 0.1103896862 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
16 Hb_000501_040 0.1177970881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000261_370 0.1185966388 - - -
18 Hb_005569_030 0.1188772 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
19 Hb_000260_480 0.1191585487 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
20 Hb_000010_370 0.1215925824 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_120 Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_002849_120--Hb_033153_040 Hb_001153_090 Hb_001153_090 Hb_002849_120--Hb_001153_090 Hb_003849_030 Hb_003849_030 Hb_002849_120--Hb_003849_030 Hb_000680_020 Hb_000680_020 Hb_002849_120--Hb_000680_020 Hb_001160_020 Hb_001160_020 Hb_002849_120--Hb_001160_020 Hb_127661_010 Hb_127661_010 Hb_002849_120--Hb_127661_010 Hb_005569_030 Hb_005569_030 Hb_033153_040--Hb_005569_030 Hb_033153_040--Hb_000680_020 Hb_003077_140 Hb_003077_140 Hb_033153_040--Hb_003077_140 Hb_000313_100 Hb_000313_100 Hb_033153_040--Hb_000313_100 Hb_033153_040--Hb_001153_090 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_023344_130 Hb_023344_130 Hb_001153_090--Hb_023344_130 Hb_001153_090--Hb_001160_020 Hb_001153_090--Hb_003077_140 Hb_003849_030--Hb_001160_020 Hb_000046_430 Hb_000046_430 Hb_003849_030--Hb_000046_430 Hb_006970_170 Hb_006970_170 Hb_003849_030--Hb_006970_170 Hb_007113_020 Hb_007113_020 Hb_003849_030--Hb_007113_020 Hb_003849_030--Hb_001153_090 Hb_003683_200 Hb_003683_200 Hb_000680_020--Hb_003683_200 Hb_000680_020--Hb_127661_010 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_000680_020--Hb_003077_140 Hb_001160_020--Hb_007747_100 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_001160_020--Hb_023344_130 Hb_000261_370 Hb_000261_370 Hb_127661_010--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_029576_100 Hb_029576_100 Hb_127661_010--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0420399 41.1731 32.7867 17.187 0.0379714 0.017477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0447041 0.0351817 0.0270837 21.6833 38.7337

CAGE analysis