Hb_016637_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig16637: 19383-21334
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04240g
description POPTRDRAFT_639636; hypothetical protein
nr
ID XP_012067087.1
description PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A067L4C7
description MYB family protein OS=Jatropha curcas GN=JCGZ_01881 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016637_020 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
2 Hb_127661_010 0.0838329727 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000191_100 0.0848432022 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003494_180 0.087612122 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
5 Hb_007205_020 0.0903000778 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
6 Hb_170878_050 0.0910198949 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
7 Hb_029866_110 0.094025993 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
8 Hb_031862_200 0.0961984291 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
9 Hb_005496_170 0.1012198173 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
10 Hb_000261_370 0.10291588 - - -
11 Hb_001866_100 0.1069309595 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
12 Hb_002845_020 0.1094517627 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
13 Hb_001819_010 0.1127045879 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
14 Hb_123560_050 0.1174638131 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
15 Hb_010880_010 0.1223398883 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_000680_020 0.123644423 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000009_390 0.126308728 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
18 Hb_004785_200 0.1280610353 - - PREDICTED: protein MKS1 [Jatropha curcas]
19 Hb_001634_080 0.1289242597 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_001856_110 0.1293142247 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]

Gene co-expression network

sample Hb_016637_020 Hb_016637_020 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_007205_020 Hb_007205_020 Hb_016637_020--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110 Hb_000261_370 Hb_000261_370 Hb_127661_010--Hb_000261_370 Hb_029576_100 Hb_029576_100 Hb_127661_010--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_000680_020 Hb_000680_020 Hb_127661_010--Hb_000680_020 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_000191_100--Hb_029866_110 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_002845_020 Hb_002845_020 Hb_003494_180--Hb_002845_020 Hb_003494_180--Hb_007205_020 Hb_001866_100 Hb_001866_100 Hb_003494_180--Hb_001866_100 Hb_057321_010 Hb_057321_010 Hb_003494_180--Hb_057321_010 Hb_001856_110 Hb_001856_110 Hb_003494_180--Hb_001856_110 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_007205_020--Hb_002845_020 Hb_007205_020--Hb_001866_100 Hb_007205_020--Hb_005496_170 Hb_001660_050 Hb_001660_050 Hb_170878_050--Hb_001660_050 Hb_170878_050--Hb_029866_110 Hb_009659_040 Hb_009659_040 Hb_170878_050--Hb_009659_040 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_029866_110--Hb_001660_050 Hb_029866_110--Hb_123560_050 Hb_029866_110--Hb_009659_040 Hb_029866_110--Hb_001819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0191814 6.45898 5.0802 2.32083 0 0.0204574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.21747 9.74244

CAGE analysis