Hb_123560_050

Information

Type -
Description -
Location Contig123560: 43664-46183
Sequence    

Annotation

kegg
ID rcu:RCOM_1154320
description Nodulation receptor kinase precursor, putative (EC:2.7.10.2)
nr
ID XP_012079318.1
description PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID A0A067K6Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12467 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07196: 43655-45008 , PASA_asmbl_07197: 45158-45697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123560_050 0.0 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
2 Hb_001819_010 0.0614210156 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
3 Hb_000377_160 0.0854020645 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
4 Hb_003077_140 0.0924958951 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
5 Hb_029866_110 0.0930805415 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
6 Hb_007420_020 0.094770278 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_026144_030 0.0957488423 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
8 Hb_001357_360 0.1010852344 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003767_010 0.101347629 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
10 Hb_001085_230 0.10319753 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
11 Hb_000614_190 0.1049362339 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
12 Hb_000264_340 0.1078858544 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
13 Hb_109489_010 0.109917725 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
14 Hb_114310_050 0.1108238274 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
15 Hb_009659_040 0.1108365132 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
16 Hb_170878_050 0.1117840418 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
17 Hb_000649_280 0.1124490116 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
18 Hb_005470_040 0.113878776 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
19 Hb_000191_100 0.114087134 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000597_080 0.1160664076 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_123560_050 Hb_123560_050 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_000377_160 Hb_000377_160 Hb_123560_050--Hb_000377_160 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_029866_110 Hb_029866_110 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_006788_100 Hb_006788_100 Hb_001819_010--Hb_006788_100 Hb_170878_050 Hb_170878_050 Hb_001819_010--Hb_170878_050 Hb_001819_010--Hb_029866_110 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_009659_040 Hb_009659_040 Hb_001819_010--Hb_009659_040 Hb_000649_280 Hb_000649_280 Hb_000377_160--Hb_000649_280 Hb_003767_010 Hb_003767_010 Hb_000377_160--Hb_003767_010 Hb_005470_040 Hb_005470_040 Hb_000377_160--Hb_005470_040 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_031949_010 Hb_031949_010 Hb_000377_160--Hb_031949_010 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070 Hb_029866_110--Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_029866_110--Hb_001660_050 Hb_016637_020 Hb_016637_020 Hb_029866_110--Hb_016637_020 Hb_029866_110--Hb_009659_040 Hb_114310_050 Hb_114310_050 Hb_007420_020--Hb_114310_050 Hb_005054_280 Hb_005054_280 Hb_007420_020--Hb_005054_280 Hb_000614_190 Hb_000614_190 Hb_007420_020--Hb_000614_190 Hb_007420_010 Hb_007420_010 Hb_007420_020--Hb_007420_010 Hb_007420_020--Hb_026144_030 Hb_008111_010 Hb_008111_010 Hb_026144_030--Hb_008111_010 Hb_026144_030--Hb_000614_190 Hb_026144_030--Hb_000767_010 Hb_001143_140 Hb_001143_140 Hb_026144_030--Hb_001143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00771809 2.82639 1.08881 1.28933 0.00772642 0.021252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.69824 2.78383

CAGE analysis